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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIPIIDSEYRWRHWATKDWPADELLA
FVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAG
EFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLH
GVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGT
LFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEE
ARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSE
LLENEKG

The query sequence (length=487) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ybb:A 487 487 1.0000 1.0000 1.0000 0.0 5ybb:B
2 2okc:B 426 383 0.2464 0.2817 0.3133 1.58e-54 2okc:A
3 2y7h:B 529 455 0.2752 0.2533 0.2945 6.61e-50 2y7h:C
4 7eew:A 610 263 0.1828 0.1459 0.3384 5.78e-41
5 7vru:A 497 240 0.1643 0.1610 0.3333 5.83e-31 7vs4:A
6 7vru:B 494 251 0.1520 0.1498 0.2948 2.12e-21 7vs4:B
7 7btq:A 474 433 0.2012 0.2068 0.2263 5.99e-17 7btq:D
8 7lo5:A 1016 49 0.0370 0.0177 0.3673 0.15 7lo5:B, 7lo5:C, 7lo5:D, 7lvv:A, 7lvv:B, 7lvv:C, 7lvv:D
9 5vzj:J 460 236 0.1068 0.1130 0.2203 0.36
10 8c45:A 1218 52 0.0329 0.0131 0.3077 0.62 8c45:B, 8q56:A
11 6zxv:A 325 33 0.0308 0.0462 0.4545 1.5 6zxv:B, 6zxw:G
12 5z57:A 1978 91 0.0411 0.0101 0.2198 1.9
13 8q7x:A 1914 91 0.0411 0.0104 0.2198 1.9
14 8qp8:A 1918 91 0.0411 0.0104 0.2198 2.1
15 8y6o:C 2227 91 0.0411 0.0090 0.2198 2.1 8h6e:5B, 8h6j:5B, 8qp9:A, 6qw6:5A, 6qx9:5A, 8qxd:A, 8r08:A
16 8c6j:A 2261 91 0.0411 0.0088 0.2198 2.2 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A
17 7abg:A 2174 91 0.0411 0.0092 0.2198 2.3 7abi:A, 8q91:A, 8rc0:A
18 8i0p:A 2149 91 0.0411 0.0093 0.2198 2.3 8q7q:A, 8q7v:A, 8q7w:A
19 5z56:A 2232 91 0.0411 0.0090 0.2198 2.3 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
20 8h6k:5B 2253 91 0.0411 0.0089 0.2198 2.5 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
21 7f4m:D 216 46 0.0267 0.0602 0.2826 2.6 7f4l:C, 7f4m:C, 7f4n:C, 7f4n:D
22 5hr4:J 751 131 0.0637 0.0413 0.2366 3.5 5hr4:C
23 1wy7:D 204 48 0.0246 0.0588 0.2500 5.1 1wy7:A, 1wy7:B, 1wy7:C
24 1k6x:A 324 55 0.0411 0.0617 0.3636 5.6 1ti7:A, 2vut:A, 2vut:B, 2vut:C, 2vut:D, 2vut:E, 2vut:F, 2vut:G, 2vut:H, 2vuu:A, 2vuu:B, 2vuu:C, 2vuu:D, 2vuu:E, 2vuu:F, 2vuu:G, 2vuu:H
25 1hgx:A 164 32 0.0267 0.0793 0.4062 6.0
26 2zwv:A 373 25 0.0267 0.0349 0.5200 6.5 3dmf:A, 3dmg:A, 3dmh:A, 2zul:A
27 7fap:A 1236 94 0.0452 0.0178 0.2340 9.2
28 1qhf:A 240 68 0.0349 0.0708 0.2500 9.8 1bq3:D, 1bq3:A, 1bq4:A, 5pgm:E, 1qhf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218