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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PQFEKIEGRMIRILYLLVKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTDTHVPYLDVGRIDAIGECWFAS
EEQYQVYMESDIRKAWFEHGKYFIGQLKPFVTEELV

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hds:A 116 116 1.0000 1.0000 1.0000 2.86e-85 3hds:D, 3hds:B, 3hds:C, 3hf5:A, 3hf5:B, 3hf5:C, 3hf5:D, 3hfk:A, 3hfk:B, 3hfk:C, 3hfk:D
2 8q9x:A 471 48 0.1293 0.0318 0.3125 1.6 8q9x:B, 8q9y:A, 8q9y:B, 8you:A, 8you:B, 8yu5:A, 8yu5:B, 8yu6:A, 8yu6:B, 8z75:A, 8z75:B, 8z75:C, 8z76:A, 8z76:B, 8z76:C, 8z77:A, 8z77:B, 8z77:C
3 7aor:ar 255 35 0.0862 0.0392 0.2857 2.3
4 5gl5:A 431 29 0.0948 0.0255 0.3793 3.2 5gl5:B
5 6hiv:DQ 256 59 0.1466 0.0664 0.2881 3.5 6hiw:DQ, 6hiy:DQ, 7pub:DQ
6 3ma0:A 313 63 0.1379 0.0511 0.2540 3.6 3m9x:A, 3ma0:B, 3ma0:C
7 2v25:A 231 39 0.1121 0.0563 0.3333 4.2 2v25:B
8 1ycd:B 238 20 0.0603 0.0294 0.3500 4.7 1ycd:A
9 4f10:A 353 36 0.1034 0.0340 0.3333 7.5 4f10:B, 4f13:A, 4f13:B, 1hv6:A, 1qaz:A
10 9emu:C 227 10 0.0862 0.0441 1.0000 7.7 9emu:A, 9emu:B, 9emu:D
11 9c8v:B 434 40 0.0948 0.0253 0.2750 9.2 8d0k:E, 8d96:B, 8d9d:B, 5exr:B, 5exr:F, 5f0q:A, 5f0q:B, 5f0s:A, 5f0s:B, 3l9q:A, 7opl:D, 3q36:A, 3q36:B, 8qj7:D, 4rr2:D, 7u5c:B, 8vy3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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