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BioLiP
>protein
PPQYMIDLYNRYTTDKSSTPASNIVRSFSVEDAISTAATEDFPFQKHILIFNISIPRHEQITRAELRLYVSCQNDVDSTH
GLEGSMVVYDVLEDSETWDQATGTKTFLVSQDIRDEGWETLEVSSAVKRWVRADSTTNKNKLEVTVQSHRESCDTLDISV
PPGSKNLPFFVVFSNDRSNGTKETRLELKEMIGHEQ

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ycg:B 198 196 1.0000 0.9899 1.0000 6.13e-148 4ycg:A, 4yci:A, 4yci:B
2 8d0k:D 419 49 0.0816 0.0382 0.3265 1.8 4bpu:A, 4bpu:C, 4bpw:A, 4bpw:C, 4bpx:A, 4bpx:C, 9c8v:A, 8d9d:A, 5exr:A, 5exr:E, 4lik:A, 4lil:A, 4mhq:A, 7opl:C, 8qj7:C, 6r4s:A, 6r4s:E, 6r4t:A, 6r4t:D, 6r4u:A, 6r4u:E, 6r5d:A, 6r5d:E, 6r5e:A, 6r5e:E, 6rb4:A, 4rr2:A, 4rr2:C, 7u5c:A
3 7pua:IA 704 85 0.1071 0.0298 0.2471 2.8 7pub:IA
4 7ycx:K 590 89 0.1429 0.0475 0.3146 6.4 7cun:K, 8r22:C, 8r23:C, 8r2d:C, 8rc4:k, 8uib:K
5 3jd5:k 275 52 0.0765 0.0545 0.2885 9.4 8oin:AB, 8oip:AB, 6ydw:Ak

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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