Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PPEIVRHIVFNRYKSQLSQKQIDQIIADYGNLQNIAPEMKEWKWGTDLGPAVEDRADGFTHAYESTFHSVADFLNFFYSP
PALEFAKEFFPACEKIVVLNYIINE

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5y02:C 107 105 1.0000 0.9813 1.0000 1.77e-76 5y02:A, 5y02:F, 5y02:I, 5y02:K, 5y02:L
2 2q3p:A 103 97 0.3048 0.3107 0.3299 3.61e-17 1q4r:A
3 7w6d:A 104 101 0.2857 0.2885 0.2970 3.32e-14 5b09:A, 7w6d:B, 7w6e:A, 7w6e:B, 7w6f:A, 7w6f:B
4 3bgu:A 106 47 0.1524 0.1509 0.3404 8.00e-05
5 1d3a:A 303 60 0.1714 0.0594 0.3000 0.65 1d3a:B, 1hlp:A, 1hlp:B, 2hlp:A, 1o6z:A, 1o6z:B, 1o6z:C, 1o6z:D, 2x0r:A, 2x0r:B
6 4imr:A 258 42 0.1238 0.0504 0.3095 1.00 4imr:B
7 3vwx:C 220 26 0.1048 0.0500 0.4231 3.2 3vwx:A, 3vwx:B, 3vwx:D
8 3zv5:A 275 61 0.1333 0.0509 0.2295 3.4 2y99:A, 2y99:B, 3zv5:B, 3zv6:A, 3zv6:B
9 7ood:v 63 32 0.1048 0.1746 0.3438 6.6 7p6z:v, 7pah:v, 7pai:v, 7paj:v, 7pak:v, 7pal:v, 7pam:v, 7pan:v, 7pao:v, 7paq:v, 7par:v, 7pas:v, 7pat:v, 7pau:v, 7ph9:v, 7pha:v, 7phb:v, 7phc:v, 7pi8:v, 7pi9:v, 7pia:v, 7pib:v, 7pic:v, 7pio:v, 7pip:v, 7piq:v, 7pir:v, 7pis:v, 7pit:v
10 5fvn:A 342 52 0.1333 0.0409 0.2692 6.7 5fvn:B, 5fvn:C, 5fvn:D, 5fvn:E, 5fvn:F
11 1uf2:A 967 50 0.1429 0.0155 0.3000 6.9
12 3bnf:A 471 40 0.0857 0.0191 0.2250 8.8 3bng:A, 3bnh:A, 3bnj:A, 2e80:A, 2e81:A, 1fs7:A, 1fs8:A, 1fs9:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218