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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PNSGTLALLLDEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEK
TPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNGLIDTSWSAIQIGIYAKHLEHW
LRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDRE
VVRRLREFYRPFNLKFYQMTGHDFGWDG

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1t8t:B 271 271 1.0000 0.9889 0.9889 0.0 1t8t:A, 1t8u:B, 1t8u:A, 6xkg:A, 6xkg:B, 6xl8:A, 6xl8:B
2 7scd:A 371 260 0.4739 0.3423 0.4885 8.32e-83 3bd9:A, 7sce:A
3 1zrh:A 263 260 0.4179 0.4259 0.4308 1.54e-76 3uan:A, 3uan:B, 1vkj:A, 1vkj:B, 1vkj:C
4 8ccy:A 754 269 0.3060 0.1088 0.3048 1.07e-31 1nst:A
5 8chs:A 718 269 0.3022 0.1128 0.3011 1.43e-30 8cd0:A
6 3rnl:A 247 200 0.1940 0.2105 0.2600 1.10e-08
7 5x2b:L 283 107 0.0970 0.0919 0.2430 0.008 5x2b:C, 5x2b:A, 5x2b:B, 5x2b:D, 5x2b:E, 5x2b:F, 5x2b:G, 5x2b:H, 5x2b:I, 5x2b:J, 5x2b:K
8 1x8k:A 344 106 0.1194 0.0930 0.3019 0.027 1fmj:A, 1fmj:B, 1fml:A, 1fml:B, 1x8j:A, 1x8j:B, 1x8k:B, 1x8l:A, 1x8l:B
9 3ap2:A 300 206 0.1716 0.1533 0.2233 0.041 3ap1:A, 3ap1:B, 3ap2:B, 3ap3:A, 3ap3:B, 3ap3:C, 3ap3:D
10 2gwh:B 288 105 0.1045 0.0972 0.2667 0.064 2gwh:A
11 1q20:A 294 137 0.1231 0.1122 0.2409 0.071 1q1q:A, 1q1z:A, 1q22:A
12 5ylz:I 517 146 0.1269 0.0658 0.2329 0.13
13 5wnb:H 226 48 0.0597 0.0708 0.3333 0.25 5wnb:I
14 4eec:A 253 102 0.0970 0.1028 0.2549 0.26 2ovb:A, 2ovf:A
15 3bfx:A 253 105 0.1082 0.1146 0.2762 0.28 3bfx:B
16 1eyy:A 504 33 0.0597 0.0317 0.4848 0.45 1eyy:B, 1eyy:C, 1eyy:D, 1ez0:A, 1ez0:B, 1ez0:C, 1ez0:D
17 2buj:A 291 64 0.0746 0.0687 0.3125 0.84 2buj:B
18 8w5z:A 333 68 0.0821 0.0661 0.3235 1.2 8w5z:C
19 5wrj:A 275 205 0.1493 0.1455 0.1951 2.0 5wri:A, 5wri:B, 5wrj:B, 5wrj:C, 5wrj:D
20 8t4j:A 552 59 0.0709 0.0344 0.3220 2.4 1jj7:A, 8t4e:A, 8t4f:A, 8t4g:A, 8t4h:A, 8t4i:A
21 5fal:A 435 65 0.0746 0.0460 0.3077 4.0 5fan:A, 4kec:A
22 2ixf:A 255 25 0.0410 0.0431 0.4400 5.4 2ixe:A, 2ixe:D, 2ixf:B, 2ixf:C, 2ixf:D, 2ixg:A, 4k8o:A
23 3u3k:A 289 101 0.0746 0.0692 0.1980 7.8 2a3r:A, 2a3r:B, 2d06:A, 2d06:B, 4gra:A, 4gra:B, 1ls6:A, 3qvu:A, 3qvu:B, 3qvv:A, 3qvv:B, 3u3j:A, 3u3j:B, 3u3k:B, 3u3m:A, 3u3o:A, 3u3r:A, 1z28:A, 1z29:A
24 8dgc:A 2028 87 0.0784 0.0104 0.2414 8.3 8dgc:B, 8dgc:C, 8dgc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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