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BioLiP
>protein
PMVAYQGLSLGLVCAVVALLLLTGNIMTHGTIAEQQMQDRLATLREVLPQSLYDNNPLADSFKVQDAELGEVEVLPARLQ
GKLTAVVFQGRNIGYGGPIEQMMSVDAQGKILGVRVLTHKETPGLADKIEASRSDWIKVFDGLSLENTALDKWKVKKDGG
QFDQFAGATITPRAVVKTVLQGLQFQARHAEQLKA

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ahx:G 197 195 1.0000 0.9898 1.0000 2.36e-143 8rb8:G, 8rb9:G, 8rbm:G, 8rbq:G
2 7zc6:G 187 187 0.2974 0.3102 0.3102 1.20e-08
3 8p2b:A 83 90 0.1436 0.3373 0.3111 3.37e-05 8p2b:B
4 6pgw:A 427 36 0.0615 0.0281 0.3333 0.99 5co1:A, 5co1:B, 5co1:C, 5co1:D
5 4xhf:B 225 104 0.1692 0.1467 0.3173 1.2 4xhf:A, 4xhf:C, 4xhf:D
6 6iaa:A 815 88 0.1333 0.0319 0.2955 1.5 6iaa:B
7 7lj2:A 507 63 0.0718 0.0276 0.2222 2.4 7lha:A, 7lha:B, 7lj2:B
8 2y7h:B 529 61 0.0872 0.0321 0.2787 2.8 2y7h:C
9 3lij:A 465 73 0.1179 0.0495 0.3151 2.9 3l19:A, 3l19:B
10 8bgw:A 750 52 0.0923 0.0240 0.3462 5.9 8bgw:B, 6qq5:A, 6qq5:B, 6qq6:A, 6qq6:B, 6t6v:A
11 7e24:D 251 39 0.0718 0.0558 0.3590 6.5 7e24:A, 7e24:B, 7e24:C, 7e3x:A, 7e3x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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