Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLRLLSSVHYLTGELPQLYDYPDDGTWLRANFISSLDGGATVTSGAMAGPGDRFVFNLLRELADVIVVGVGTVRVRMGVV
QRQHRQARGQSEVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLAGLAEVIACSGDDPGTVDEAVLVSQ
LAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVGGLARRIVTGPGQVLTRMRCAHVLTDDSGYLYTRYVKT

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6de5:A 246 246 1.0000 0.9634 0.9634 1.28e-163 4xrb:A, 4xt4:A, 4xt5:A, 4xt6:A, 4xt7:A, 4xt8:A
2 2o7p:A 358 79 0.1181 0.0782 0.3544 6.80e-07 2o7p:B, 2obc:A
3 6p8c:A 216 190 0.2447 0.2685 0.3053 1.37e-06 6p8c:B
4 5xv0:F 239 149 0.1688 0.1674 0.2685 2.14e-06 5xux:A, 5xux:B, 5xux:C, 5xux:D, 5xux:E, 5xux:F, 5xv0:A, 5xv0:B, 5xv0:C, 5xv0:D, 5xv0:E, 5xv2:A
5 8dqb:A 370 62 0.0970 0.0622 0.3710 1.86e-05 8dq9:A, 8dq9:B, 8dqc:A, 8dqc:B
6 2azn:A 219 185 0.2025 0.2192 0.2595 3.22e-05 2azn:B, 2azn:C, 2azn:D, 2azn:E, 2azn:F
7 4g3m:A 361 190 0.2025 0.1330 0.2526 1.50e-04 2b3z:A, 2b3z:B, 2b3z:C, 2b3z:D, 2d5n:A, 2d5n:B, 2d5n:C, 2d5n:D, 3ex8:A, 3ex8:B, 3ex8:C, 3ex8:D, 4g3m:B, 4g3m:C, 4g3m:D
8 1d1g:A 164 46 0.0717 0.1037 0.3696 0.004 1d1g:B
9 3zpc:A 357 190 0.1983 0.1317 0.2474 0.029 3zpc:B, 3zpg:A
10 3kgy:A 218 83 0.0970 0.1055 0.2771 0.24 3kgy:B
11 6uv8:A 183 38 0.0591 0.0765 0.3684 2.8 6uvb:A
12 6fah:E 393 91 0.1181 0.0712 0.3077 3.8 6fah:A
13 6l4c:C 353 51 0.0675 0.0453 0.3137 5.1
14 3f8p:D 310 44 0.0675 0.0516 0.3636 5.6 3f8d:A, 3f8d:B, 3f8d:C, 3f8d:D, 3f8p:A, 3f8p:B, 3f8p:C, 3f8r:A, 3f8r:B, 3f8r:C, 3f8r:D
15 6l4c:B 373 51 0.0675 0.0429 0.3137 7.9 6l4c:A
16 3eb0:A 312 37 0.0633 0.0481 0.4054 10.0 3eb0:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218