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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSV
LTQQALLQQHLNKIN

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ecm:B 95 95 1.0000 1.0000 1.0000 1.03e-61 1ecm:A
2 2gtv:X 104 98 0.3263 0.2981 0.3163 3.99e-08
3 2ao2:A 165 58 0.2000 0.1152 0.3276 0.001 2ao2:B, 2ao2:C, 2fp2:B
4 5ckx:D 79 54 0.2211 0.2658 0.3889 0.011 5ckx:C, 2w1a:C, 2w1a:D
5 8pnj:A 390 80 0.2526 0.0615 0.3000 0.047
6 6al9:B 91 85 0.2632 0.2747 0.2941 0.090 6al9:A
7 5gmu:B 87 51 0.2000 0.2184 0.3725 0.11 5gmu:A
8 9c0i:A 425 77 0.2105 0.0471 0.2597 0.89 9c0j:A
9 5j6f:A 352 74 0.2316 0.0625 0.2973 1.1 5j6f:B
10 6ntw:A 505 64 0.2000 0.0376 0.2969 1.2
11 4lps:A 215 74 0.2211 0.0977 0.2838 1.6 4lps:B
12 8gix:E 991 55 0.1895 0.0182 0.3273 1.9
13 1l3l:B 233 27 0.1158 0.0472 0.4074 4.0 1h0m:A, 1h0m:B, 1h0m:C, 1h0m:D, 1l3l:D, 1l3l:A, 1l3l:C
14 5ne1:B 270 28 0.1579 0.0556 0.5357 5.3 5ne2:A, 5ne2:B, 5ne3:A, 5ne3:B, 6qw7:A, 6qw7:B
15 6ddg:Z 121 51 0.1895 0.1488 0.3529 8.3 7asm:L, 7aso:Q, 7asp:L, 6ddd:Z, 6fxc:AL, 6fxc:BL, 5hkv:K, 5hl7:K, 6hma:L, 5li0:Q, 5nd8:Q, 5nd9:Q, 5ngm:AL, 7nhl:Q, 7nhm:Q, 5nrg:K, 8p2f:Q, 8p2g:Q, 8p2h:Q, 7p48:L, 6s0x:L, 6s0z:L, 6s12:L, 6s13:L, 6sj6:Q, 5t7v:LQ, 5tcu:LQ, 7ttu:Z, 7ttw:Z, 4wce:K, 4wf9:K, 4wfa:K, 4wfb:K, 6wqn:Z, 6wqq:Z, 6wrs:Z, 6wru:Z, 8y36:L, 8y37:L, 8y38:L, 8y39:L, 6yef:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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