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BioLiP
>protein
PKRKKNPMQLRRKTYGLHFKERYLKLEEWYFCPLCAEPKKQGEWCRREDCRQIKP

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:T 55 55 1.0000 1.0000 1.0000 2.02e-35 7am2:T, 7ane:T, 7aoi:A5, 6hiv:A5, 6hix:A5, 6yxx:A5, 6yxy:A5
2 7l5a:A 477 24 0.1818 0.0210 0.4167 3.0
3 6pl0:B 608 24 0.1818 0.0164 0.4167 3.1 5akp:A, 5akp:B, 7l59:A, 6ndo:A, 6ndo:B, 6ndp:A, 6ndp:B, 6pl0:A, 5uyr:A, 5uyr:B
4 7e0l:A 491 42 0.2545 0.0285 0.3333 5.5 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
5 8fru:p 93 42 0.2545 0.1505 0.3333 8.1 8br8:Lq, 8brm:Lq, 8bsi:Lq, 8bsj:Lq, 8btd:Lq, 8btr:Lq, 7pwg:p, 7pwo:p2
6 1yk5:A 53 28 0.1636 0.1698 0.3214 8.3 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
7 3j79:R 252 23 0.1818 0.0397 0.4348 9.0 3jbn:AR, 3jbo:AR, 3jbp:AR, 8tpu:AR, 5umd:R
8 6k0w:B 499 22 0.1455 0.0160 0.3636 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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