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BioLiP
>protein
PKKRRNGGRSKHNRGHVNPLRCSNCGRCVPKDKAIKRFNIRNIVDTSAQRDIKEASVYSTFQLPKLYIKQCYCVSCAIHS
RFVRVRSREQRRVRK

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3j7a:3 95 95 1.0000 1.0000 1.0000 1.30e-65 3jbn:3, 3jbo:3, 3jbp:3, 6okk:c, 8tpu:S3
2 5xxu:a 99 95 0.7789 0.7475 0.7789 1.21e-50
3 4v6w:Aa 107 93 0.7053 0.6262 0.7204 2.63e-45 6xu6:Aa, 6xu7:Aa, 6xu8:Aa
4 6ip5:3C 107 93 0.6737 0.5981 0.6882 1.23e-41 7a01:O3, 7a09:Q, 5a2q:a, 5aj0:Ba, 9bdl:AS26, 9bdn:AS26, 9bdp:AS26, 8bhf:b3, 9bkd:Q, 9bln:Q, 8btk:AE, 7cpu:Sa, 7cpv:Sa, 4d5l:a, 4d61:a, 6d90:bb, 6d9j:bb, 9f1b:AE, 9f1c:AE, 9f1d:AE, 6fec:k, 5flx:a, 6g5h:a, 8g5y:Sa, 8g5z:Sa, 8g60:Sa, 8g61:Sa, 8g6j:Sa, 8glp:Sa, 6gz3:Ba, 6gz4:Ba, 6gz5:Ba, 6hcf:b1, 6hcj:b2, 6hcm:b1, 6hcq:b2, 8ifd:3C, 8ife:3C, 6ip6:3C, 6ip8:3C, 3j7p:Sa, 3j7r:Sa, 3jag:aa, 3jah:aa, 3jai:aa, 3jaj:Sa, 3jan:Sa, 8jdj:AM, 8jdk:AM, 8jdl:AM, 8jdm:AM, 7jqb:b, 7jqc:b, 5k0y:k, 8k2c:Sa, 7k5i:a, 4kzx:a, 4kzy:a, 4kzz:a, 5lks:Sa, 7ls1:F3, 7ls2:F3, 5lzs:aa, 5lzt:aa, 5lzu:aa, 5lzv:aa, 5lzw:aa, 5lzx:aa, 5lzy:aa, 5lzz:aa, 7mdz:aa, 6mtb:aa, 6mtc:aa, 6mtd:aa, 6mte:aa, 7nwg:b2, 7nwh:aa, 7nwi:aa, 7o7y:AE, 7o7z:AE, 7o80:AE, 7o81:AE, 5oa3:a, 6ole:Sa, 6olf:Sa, 6olg:Ba, 6oli:Sa, 6olz:Ba, 6om0:Sa, 6om7:Sa, 7oya:a2, 7oyb:a2, 7oyc:a2, 7oyd:Aa, 8oz0:R, 8p03:b, 8p09:b, 8p2k:AE, 6p4g:b, 6p4h:b, 6p5i:b, 6p5j:b, 6p5k:b, 6p5n:b, 8pj1:Q, 8pj2:Q, 8pj3:Q, 8pj4:Q, 8pj5:Q, 8pj6:Q, 8ppk:a, 8ppl:Aa, 8q7z:AE, 8q87:AE, 7qgg:Sa, 8qoi:Sa, 7qp6:Q, 7qp7:Q, 7qvp:Sa, 7qvp:Ra, 6qzp:Sa, 7r4x:a, 6r5q:LL, 6r6g:LL, 6r6p:ZZ, 6r7q:LL, 8rg0:Q, 8scb:aa, 6sgc:b1, 7syg:b, 7syh:b, 7syi:b, 7syj:b, 7syk:b, 7syl:b, 7sym:b, 7syn:b, 7syo:b, 7syp:b, 7syq:b, 7syr:b, 7sys:b, 7syt:b, 7syu:b, 7syv:b, 7syw:b, 7syx:b, 5t2c:AE, 8t4s:a, 7toq:AS26, 7tor:AS26, 7tql:c, 7ucj:Aa, 7uck:Aa, 4ug0:Sa, 4ujc:Ca, 4ujd:Ca, 4uje:Ba, 4v6x:Aa, 5vyc:a1, 5vyc:a2, 5vyc:a3, 5vyc:a4, 5vyc:a5, 5vyc:a6, 6w2s:b, 6w2t:b, 6xa1:Sa, 7xnx:Sa, 7xny:Sa, 8xsx:Sa, 8xsy:Sa, 8xsz:Sa, 8xxl:Sa, 8xxm:Sa, 8xxn:Sa, 6y0g:Sa, 8y0w:Sa, 8y0x:Sa, 6y2l:Sa, 6y57:Sa, 6yal:b, 6yam:b, 6yan:b, 6ybw:Q, 8yoo:Sa, 8yop:Sa, 6z6l:Sa, 6z6m:Sa, 6z6n:Sa, 7zjw:SF, 7zjx:SF, 6zlw:c, 6zm7:Sa, 6zme:Sa, 6zmi:Sa, 6zmo:Sa, 6zmw:Q, 6zn5:c, 6zoj:a, 6zok:a, 6zon:Q, 6zp4:Q, 6zv6:a, 6zvh:a, 6zvj:Q, 6zvk:O3, 6zxg:h, 6zxh:h
5 8auv:J 98 93 0.6526 0.6327 0.6667 3.44e-41 8b2l:J1, 7qix:N, 7qiz:DA
6 7olc:Sa 104 93 0.6421 0.5865 0.6559 5.90e-41 7old:Sa, 8oo0:Sa, 7r81:b2, 7z3n:Sa, 7z3o:Sa
7 7pzy:b 100 94 0.6526 0.6200 0.6596 7.60e-41 8c3a:c, 8c3a:DN, 8cq7:c, 8cq7:DN, 8cqw:c, 8cqw:DN, 8cre:c, 8cre:DN, 8oeq:c, 8oeq:DN, 7q08:b, 7q0f:b, 7q0p:b, 7q0r:b, 8q5i:b
8 6zj3:Sb 97 93 0.6526 0.6392 0.6667 4.34e-39
9 6fyx:a 103 94 0.6421 0.5922 0.6489 4.91e-39 7a1g:e, 7b7d:e, 8bn3:D6, 8bqd:e, 8bqx:e, 8cah:e, 8cas:e, 8ccs:2, 8cdl:2, 8cdr:2, 8ceh:2, 8cf5:2, 8cg8:2, 8cgn:2, 8civ:2, 8cku:2, 8cmj:2, 5dat:D6, 5dat:d6, 5dc3:D6, 5dc3:d6, 5dge:D6, 5dge:d6, 5dgf:D6, 5dgf:d6, 5dgv:D6, 5dgv:d6, 8eub:Ba, 8evp:Ba, 8evq:Ba, 8evr:Ba, 8evs:Ba, 8evt:Ba, 8ewb:Ba, 8ewc:Ba, 5fci:D6, 5fci:d6, 5fcj:D6, 5fcj:d6, 6fyy:a, 6gq1:AQ, 6gqb:AQ, 6gqv:AQ, 6gsm:a, 6gsn:a, 6hhq:b, 6hhq:d6, 5i4l:D6, 5i4l:d6, 6i7o:e, 6i7o:eb, 8i7j:a, 5it7:a, 5it9:a, 3j6x:26, 3j6y:26, 3j77:26, 3j78:26, 3j80:a, 3j81:a, 3jam:a, 3jap:a, 5juo:XB, 5jup:XB, 5jus:XB, 5jut:XB, 5juu:XB, 8k2d:Sa, 8k82:Sa, 5ll6:e, 5lyb:D6, 5lyb:d6, 5m1j:a2, 5mc6:e, 5mei:d6, 5mei:b, 7mpi:Ba, 7mpj:Ba, 7n8b:Ba, 5ndg:D6, 5ndg:d6, 5ndv:D6, 5ndv:d6, 5ndw:D6, 5ndw:d6, 7nrc:Se, 7nrd:Se, 5obm:D6, 5obm:d6, 5on6:d6, 5on6:b, 7osa:eS26, 7osm:eS26, 6q8y:e, 7rr5:Sa, 8rw1:a, 6s47:Bb, 8s8d:a, 8s8e:a, 8s8f:a, 8s8g:a, 8s8h:a, 8s8i:a, 8s8j:a, 6snt:a, 6sv4:e, 6sv4:eb, 6sv4:ec, 6t4q:Sa, 6t7i:Sa, 6t7t:Sa, 6t83:ab, 6t83:1, 5tbw:b, 5tbw:d6, 6tb3:e, 5tga:D6, 5tga:d6, 5tgm:D6, 5tgm:d6, 6tnu:e, 4u3m:D6, 4u3m:d6, 4u3n:D6, 4u3n:d6, 4u3u:D6, 4u3u:d6, 4u4n:D6, 4u4n:d6, 4u4o:D6, 4u4o:d6, 4u4q:D6, 4u4q:d6, 4u4r:D6, 4u4r:d6, 4u4u:D6, 4u4u:d6, 4u4y:D6, 4u4y:d6, 4u4z:D6, 4u4z:d6, 4u50:D6, 4u50:d6, 4u51:D6, 4u51:d6, 4u52:D6, 4u52:d6, 4u53:D6, 4u53:d6, 4u55:D6, 4u55:d6, 4u56:D6, 4u56:d6, 4u6f:D6, 4u6f:d6, 4uer:5, 6uz7:a, 4v88:Aa, 4v88:Ca, 4v8y:A0, 4v8z:A0, 4v92:Ba, 6woo:aa, 6xiq:AQ, 6xir:AQ, 8y0u:Sa, 6z6j:Sa, 6z6k:Sa, 6zce:b, 7zpq:Aa, 7zrs:Aa, 6zu9:e, 7zuw:Aa, 7zux:Da, 6zvi:K, 7zw0:se
10 9bh5:Aa 99 92 0.6316 0.6061 0.6522 1.64e-37 9cai:Aa
11 8btd:Sd 108 94 0.6211 0.5463 0.6277 6.97e-36 8br8:Sd, 8brm:Sd, 8bsi:Sd, 8bsj:Sd, 8btr:Sd, 8fvy:a, 8g4s:a, 7pwf:a, 7pwo:a1
12 4bts:A5 100 97 0.5579 0.5300 0.5464 1.29e-32 4bts:B5, 4bts:C5, 4bts:D5, 4v5o:A5, 4v5o:B5
13 8jiw:Ba 98 80 0.5368 0.5204 0.6375 1.69e-32 8ip8:db, 8ip9:db, 8ipa:db, 8ipb:db, 8r6f:a, 4v7e:Ba
14 8p5d:SAA 101 94 0.5158 0.4851 0.5213 3.47e-32 8p60:SAA, 8p60:RAA, 7qca:SAA
15 6rm3:SAA 97 94 0.5158 0.5052 0.5213 3.89e-32
16 6zu5:SAA 97 94 0.5053 0.4948 0.5106 4.90e-32
17 8rxh:Sb 104 96 0.5474 0.5000 0.5417 5.82e-30 8a3w:Sb, 8a98:Sb, 6az1:b, 8ovj:Sb, 8rxx:Sb, 5t2a:AV
18 5xyi:a 100 79 0.4947 0.4700 0.5949 1.14e-28
19 8ova:AV 103 96 0.5368 0.4951 0.5312 5.72e-28 8ove:AV, 4v8m:AV
20 7qep:D6 101 91 0.4421 0.4158 0.4615 6.03e-28
21 7ase:t 104 96 0.5263 0.4808 0.5208 2.26e-27 5opt:T
22 7zol:B 1702 37 0.1368 0.0076 0.3514 1.7 7zoq:B
23 3j6b:E 274 34 0.1263 0.0438 0.3529 1.8 5mrc:E, 5mre:E, 5mrf:E
24 7plm:A 1177 55 0.1789 0.0144 0.3091 2.9 7plm:B
25 1b0p:A 1231 55 0.1789 0.0138 0.3091 2.9 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
26 6cin:B 1169 55 0.1579 0.0128 0.2727 3.3 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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