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BioLiP
>protein
PKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA
RIVRVRSREDRKNR

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fyx:a 103 94 0.9149 0.8350 0.9149 1.12e-58 7a1g:e, 7b7d:e, 8bn3:D6, 8bqd:e, 8bqx:e, 8cah:e, 8cas:e, 8ccs:2, 8cdl:2, 8cdr:2, 8ceh:2, 8cf5:2, 8cg8:2, 8cgn:2, 8civ:2, 8cku:2, 8cmj:2, 5dat:D6, 5dat:d6, 5dc3:D6, 5dc3:d6, 5dge:D6, 5dge:d6, 5dgf:D6, 5dgf:d6, 5dgv:D6, 5dgv:d6, 8eub:Ba, 8evp:Ba, 8evq:Ba, 8evr:Ba, 8evs:Ba, 8evt:Ba, 8ewb:Ba, 8ewc:Ba, 5fci:D6, 5fci:d6, 5fcj:D6, 5fcj:d6, 6fyy:a, 6gq1:AQ, 6gqb:AQ, 6gqv:AQ, 6gsm:a, 6gsn:a, 6hhq:b, 6hhq:d6, 5i4l:D6, 5i4l:d6, 6i7o:e, 6i7o:eb, 8i7j:a, 5it7:a, 5it9:a, 3j6x:26, 3j6y:26, 3j77:26, 3j78:26, 3j80:a, 3j81:a, 3jam:a, 3jap:a, 5juo:XB, 5jup:XB, 5jus:XB, 5jut:XB, 5juu:XB, 8k2d:Sa, 8k82:Sa, 5ll6:e, 5lyb:D6, 5lyb:d6, 5m1j:a2, 5mc6:e, 5mei:d6, 5mei:b, 7mpi:Ba, 7mpj:Ba, 7n8b:Ba, 5ndg:D6, 5ndg:d6, 5ndv:D6, 5ndv:d6, 5ndw:D6, 5ndw:d6, 7nrc:Se, 7nrd:Se, 5obm:D6, 5obm:d6, 5on6:d6, 5on6:b, 7osa:eS26, 7osm:eS26, 6q8y:e, 7rr5:Sa, 8rw1:a, 6s47:Bb, 8s8d:a, 8s8e:a, 8s8f:a, 8s8g:a, 8s8h:a, 8s8i:a, 8s8j:a, 6snt:a, 6sv4:e, 6sv4:eb, 6sv4:ec, 6t4q:Sa, 6t7i:Sa, 6t7t:Sa, 6t83:ab, 6t83:1, 5tbw:b, 5tbw:d6, 6tb3:e, 5tga:D6, 5tga:d6, 5tgm:D6, 5tgm:d6, 6tnu:e, 4u3m:D6, 4u3m:d6, 4u3n:D6, 4u3n:d6, 4u3u:D6, 4u3u:d6, 4u4n:D6, 4u4n:d6, 4u4o:D6, 4u4o:d6, 4u4q:D6, 4u4q:d6, 4u4r:D6, 4u4r:d6, 4u4u:D6, 4u4u:d6, 4u4y:D6, 4u4y:d6, 4u4z:D6, 4u4z:d6, 4u50:D6, 4u50:d6, 4u51:D6, 4u51:d6, 4u52:D6, 4u52:d6, 4u53:D6, 4u53:d6, 4u55:D6, 4u55:d6, 4u56:D6, 4u56:d6, 4u6f:D6, 4u6f:d6, 4uer:5, 6uz7:a, 4v88:Aa, 4v88:Ca, 4v8y:A0, 4v8z:A0, 4v92:Ba, 6woo:aa, 6xiq:AQ, 6xir:AQ, 8y0u:Sa, 6z6j:Sa, 6z6k:Sa, 6zce:b, 7zpq:Aa, 7zrs:Aa, 6zu9:e, 7zuw:Aa, 7zux:Da, 6zvi:K, 7zw0:se
2 7pzy:b 100 94 0.8723 0.8200 0.8723 3.22e-55 8c3a:c, 8c3a:DN, 8cq7:c, 8cq7:DN, 8cqw:c, 8cqw:DN, 8cre:c, 8cre:DN, 8oeq:c, 8oeq:DN, 7q08:b, 7q0f:b, 7q0p:b, 7q0r:b, 8q5i:b
3 7olc:Sa 104 93 0.7128 0.6442 0.7204 6.05e-46 7old:Sa, 8oo0:Sa, 7r81:b2, 7z3n:Sa, 7z3o:Sa
4 6ip5:3C 107 93 0.7128 0.6262 0.7204 9.02e-45 7a01:O3, 7a09:Q, 5a2q:a, 5aj0:Ba, 9bdl:AS26, 9bdn:AS26, 9bdp:AS26, 8bhf:b3, 9bkd:Q, 9bln:Q, 8btk:AE, 7cpu:Sa, 7cpv:Sa, 4d5l:a, 4d61:a, 6d90:bb, 6d9j:bb, 9f1b:AE, 9f1c:AE, 9f1d:AE, 6fec:k, 5flx:a, 6g5h:a, 8g5y:Sa, 8g5z:Sa, 8g60:Sa, 8g61:Sa, 8g6j:Sa, 8glp:Sa, 6gz3:Ba, 6gz4:Ba, 6gz5:Ba, 6hcf:b1, 6hcj:b2, 6hcm:b1, 6hcq:b2, 8ifd:3C, 8ife:3C, 6ip6:3C, 6ip8:3C, 3j7p:Sa, 3j7r:Sa, 3jag:aa, 3jah:aa, 3jai:aa, 3jaj:Sa, 3jan:Sa, 8jdj:AM, 8jdk:AM, 8jdl:AM, 8jdm:AM, 7jqb:b, 7jqc:b, 5k0y:k, 8k2c:Sa, 7k5i:a, 4kzx:a, 4kzy:a, 4kzz:a, 5lks:Sa, 7ls1:F3, 7ls2:F3, 5lzs:aa, 5lzt:aa, 5lzu:aa, 5lzv:aa, 5lzw:aa, 5lzx:aa, 5lzy:aa, 5lzz:aa, 7mdz:aa, 6mtb:aa, 6mtc:aa, 6mtd:aa, 6mte:aa, 7nwg:b2, 7nwh:aa, 7nwi:aa, 7o7y:AE, 7o7z:AE, 7o80:AE, 7o81:AE, 5oa3:a, 6ole:Sa, 6olf:Sa, 6olg:Ba, 6oli:Sa, 6olz:Ba, 6om0:Sa, 6om7:Sa, 7oya:a2, 7oyb:a2, 7oyc:a2, 7oyd:Aa, 8oz0:R, 8p03:b, 8p09:b, 8p2k:AE, 6p4g:b, 6p4h:b, 6p5i:b, 6p5j:b, 6p5k:b, 6p5n:b, 8pj1:Q, 8pj2:Q, 8pj3:Q, 8pj4:Q, 8pj5:Q, 8pj6:Q, 8ppk:a, 8ppl:Aa, 8q7z:AE, 8q87:AE, 7qgg:Sa, 8qoi:Sa, 7qp6:Q, 7qp7:Q, 7qvp:Sa, 7qvp:Ra, 6qzp:Sa, 7r4x:a, 6r5q:LL, 6r6g:LL, 6r6p:ZZ, 6r7q:LL, 8rg0:Q, 8scb:aa, 6sgc:b1, 7syg:b, 7syh:b, 7syi:b, 7syj:b, 7syk:b, 7syl:b, 7sym:b, 7syn:b, 7syo:b, 7syp:b, 7syq:b, 7syr:b, 7sys:b, 7syt:b, 7syu:b, 7syv:b, 7syw:b, 7syx:b, 5t2c:AE, 8t4s:a, 7toq:AS26, 7tor:AS26, 7tql:c, 7ucj:Aa, 7uck:Aa, 4ug0:Sa, 4ujc:Ca, 4ujd:Ca, 4uje:Ba, 4v6x:Aa, 5vyc:a1, 5vyc:a2, 5vyc:a3, 5vyc:a4, 5vyc:a5, 5vyc:a6, 6w2s:b, 6w2t:b, 6xa1:Sa, 7xnx:Sa, 7xny:Sa, 8xsx:Sa, 8xsy:Sa, 8xsz:Sa, 8xxl:Sa, 8xxm:Sa, 8xxn:Sa, 6y0g:Sa, 8y0w:Sa, 8y0x:Sa, 6y2l:Sa, 6y57:Sa, 6yal:b, 6yam:b, 6yan:b, 6ybw:Q, 8yoo:Sa, 8yop:Sa, 6z6l:Sa, 6z6m:Sa, 6z6n:Sa, 7zjw:SF, 7zjx:SF, 6zlw:c, 6zm7:Sa, 6zme:Sa, 6zmi:Sa, 6zmo:Sa, 6zmw:Q, 6zn5:c, 6zoj:a, 6zok:a, 6zon:Q, 6zp4:Q, 6zv6:a, 6zvh:a, 6zvj:Q, 6zvk:O3, 6zxg:h, 6zxh:h
5 4v6w:Aa 107 93 0.6809 0.5981 0.6882 1.70e-42 6xu6:Aa, 6xu7:Aa, 6xu8:Aa
6 9bh5:Aa 99 92 0.6277 0.5960 0.6413 5.69e-40 9cai:Aa
7 3j7a:3 95 94 0.6383 0.6316 0.6383 3.52e-38 3jbn:3, 3jbo:3, 3jbp:3, 6okk:c, 8tpu:S3
8 8auv:J 98 92 0.6170 0.5918 0.6304 1.43e-37 8b2l:J1, 7qix:N, 7qiz:DA
9 5xxu:a 99 94 0.6489 0.6162 0.6489 3.70e-36
10 6zj3:Sb 97 93 0.6277 0.6082 0.6344 4.30e-36
11 8p5d:SAA 101 94 0.5532 0.5149 0.5532 4.33e-35 8p60:SAA, 8p60:RAA, 7qca:SAA
12 8jiw:Ba 98 80 0.5745 0.5510 0.6750 1.46e-33 8ip8:db, 8ip9:db, 8ipa:db, 8ipb:db, 8r6f:a, 4v7e:Ba
13 6zu5:SAA 97 94 0.5532 0.5361 0.5532 3.75e-33
14 8btd:Sd 108 94 0.5745 0.5000 0.5745 9.28e-32 8br8:Sd, 8brm:Sd, 8bsi:Sd, 8bsj:Sd, 8btr:Sd, 8fvy:a, 8g4s:a, 7pwf:a, 7pwo:a1
15 6rm3:SAA 97 94 0.5213 0.5052 0.5213 2.00e-28
16 5xyi:a 100 79 0.4468 0.4200 0.5316 3.25e-27
17 4bts:A5 100 96 0.4681 0.4400 0.4583 1.50e-26 4bts:B5, 4bts:C5, 4bts:D5, 4v5o:A5, 4v5o:B5
18 8ova:AV 103 96 0.4787 0.4369 0.4688 6.22e-25 8ove:AV, 4v8m:AV
19 7qep:D6 101 91 0.4468 0.4158 0.4615 2.21e-24
20 8rxh:Sb 104 96 0.4681 0.4231 0.4583 7.16e-23 8a3w:Sb, 8a98:Sb, 6az1:b, 8ovj:Sb, 8rxx:Sb, 5t2a:AV
21 7ase:t 104 96 0.4574 0.4135 0.4479 7.90e-22 5opt:T
22 5fxs:A 308 40 0.1702 0.0519 0.4000 0.084 4d2r:A, 3d94:A, 3f5p:A, 3f5p:B, 3f5p:C, 3f5p:D, 3f5p:E, 3f5p:F, 3f5p:G, 3f5p:H, 3f5p:I, 3f5p:J, 3f5p:K, 3f5p:M, 3f5p:L, 3f5p:R, 3f5p:S, 3f5p:T, 5fxq:A, 5fxr:A, 5hzn:A, 5hzn:B, 5hzn:C, 5hzn:D, 5hzn:E, 5hzn:F, 5hzn:G, 5hzn:H, 3i81:A, 1jqh:A, 1jqh:B, 1jqh:C, 1k3a:A, 3lvp:A, 3lvp:B, 3lvp:C, 3lvp:D, 3lw0:A, 3lw0:D, 3lw0:B, 3lw0:C, 3nw5:A, 3nw6:A, 3nw7:A, 3o23:A, 2oj9:A, 8pyi:AAA, 8pyi:BBB, 8pyi:CCC, 8pyi:DDD, 8pyi:EEE, 8pyi:FFF, 8pyi:GGG, 8pyi:HHH, 8pyj:AAA, 8pyk:AAA, 8pyl:AAA, 8pym:AAA, 8pyn:AAA, 3qqu:A, 3qqu:B, 3qqu:C, 3qqu:D, 2zm3:A, 2zm3:B, 2zm3:C, 2zm3:D
23 6mn8:A 399 33 0.1383 0.0326 0.3939 0.42
24 6v77:B 279 42 0.1277 0.0430 0.2857 2.6 6v77:A
25 4wxx:B 1178 31 0.1277 0.0102 0.3871 4.8 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
26 3swr:A 965 31 0.1277 0.0124 0.3871 7.8
27 1b90:A 516 16 0.0745 0.0136 0.4375 9.0 1b9z:A, 5bca:A, 5bca:B, 5bca:C, 5bca:D, 1itc:A, 1j0y:A, 1j0y:B, 1j0y:C, 1j0y:D, 1j0z:A, 1j0z:B, 1j0z:C, 1j0z:D, 1j10:A, 1j10:B, 1j10:C, 1j10:D, 1j11:A, 1j11:B, 1j11:C, 1j11:D, 1j12:A, 1j12:B, 1j12:C, 1j12:D, 1j18:A, 1vem:A, 1ven:A, 1veo:A, 1vep:A, 8zrz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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