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BioLiP
>protein
PKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGLE

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5t7l:A 68 67 1.0000 0.9853 1.0000 4.68e-45 1fee:A, 3iwl:A, 3iwx:A, 3iwx:B, 4qot:A, 4qot:B, 1tl4:A, 4ydx:A, 7zc3:A
2 1fd8:A 73 61 0.3881 0.3562 0.4262 1.21e-07 3k7r:A, 3k7r:B, 3k7r:C, 3k7r:D, 3k7r:E, 3k7r:F, 3k7r:G, 3k7r:H, 3k7r:I, 3k7r:J, 3k7r:K, 3k7r:L, 5vde:B, 5vde:D, 5vdf:A, 5vdf:C, 5vdf:E, 5vdf:G, 5vdf:H
3 4y2i:A 65 52 0.2687 0.2769 0.3462 0.002
4 6ff2:A 67 39 0.2239 0.2239 0.3846 0.005 6ff2:B
5 1kqk:A 80 28 0.1940 0.1625 0.4643 0.026
6 6fon:A 252 64 0.2537 0.0675 0.2656 0.49 1do5:A, 1do5:B, 1do5:C, 1do5:D, 6fn8:A, 6fn8:B, 6fol:A, 6fol:D, 6fol:E, 6fol:H, 6fon:C, 6fp6:B, 6fp6:D, 6fp6:F, 6fp6:H, 6fp6:J, 6fp6:L, 6fp6:N, 6fp6:P, 6fp6:R, 6fp6:T, 6fp6:V, 6fp6:X, 2rsq:A
7 6ba1:A 316 34 0.1493 0.0316 0.2941 1.7 6ba1:B, 6ba1:C, 6ba1:D, 6ba1:E, 6ba1:F, 6ba1:G, 6ba1:H, 6ba1:I, 6ba1:J, 6ba1:K, 6ba1:L, 6ba1:M, 6ba1:N, 6ba1:O, 6ba1:P, 6ba1:Q, 6ba1:R
8 4wad:A 498 30 0.1642 0.0221 0.3667 2.2 4x6l:A, 4x6l:B, 4x6l:C, 4x7m:A, 4x7m:B, 4x7r:A, 4x7r:B
9 8smr:F 200 41 0.1940 0.0650 0.3171 2.7 8snh:F
10 6q91:D 360 24 0.1194 0.0222 0.3333 3.4 6qje:D
11 1t71:A 281 38 0.2090 0.0498 0.3684 3.6
12 1mwz:A 73 52 0.1791 0.1644 0.2308 3.9
13 3n92:A 550 29 0.1642 0.0200 0.3793 5.5 3n98:A
14 5vqe:A 559 35 0.1791 0.0215 0.3429 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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