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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PILLTNVKPVGFASQSSTDILIGGDGKIAAVGRIDAKAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSA
GEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVT
PVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCEGIRLDIGHGGASFS
FKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVADFTVFDL
VDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI

The query sequence (length=359) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ogj:A 379 375 0.9972 0.9446 0.9547 0.0 2ogj:B, 2ogj:C, 2ogj:D, 2ogj:E, 2ogj:F
2 2ics:A 368 321 0.3148 0.3071 0.3520 2.56e-60
3 8je0:A 378 289 0.2730 0.2593 0.3391 3.87e-44 8je0:B, 8je0:C, 8je0:D
4 3gri:B 423 87 0.0864 0.0733 0.3563 0.11 3gri:A
5 2z00:A 426 66 0.0585 0.0493 0.3182 0.18
6 3e74:A 429 67 0.0696 0.0583 0.3731 0.43 3e74:C, 3e74:D
7 1gkr:A 451 92 0.0836 0.0665 0.3261 0.61 1gkr:B, 1gkr:C, 1gkr:D
8 4bjh:A 422 71 0.0724 0.0616 0.3662 0.94 3d6n:A
9 6gdd:A 375 71 0.0724 0.0693 0.3662 1.3 6gde:A, 6gdf:A, 1xrf:A, 1xrt:A, 1xrt:B
10 8hfd:A 452 74 0.0724 0.0575 0.3514 1.5 3e74:B, 8hfd:B, 8hfd:C, 8hfd:D
11 8rxh:SS 56 52 0.0474 0.3036 0.3269 2.3 8a3w:SS, 8a98:SS, 6az1:S, 8ove:A8, 8ovj:SS, 8rxx:SS, 5t2a:8
12 2iwi:B 249 132 0.0864 0.1245 0.2348 3.3 2iwi:A, 4x7q:B, 4x7q:A
13 3ubo:A 338 134 0.0836 0.0888 0.2239 3.5 3ubo:B
14 5c5c:A 432 63 0.0501 0.0417 0.2857 3.7
15 6w6v:E 169 75 0.0585 0.1243 0.2800 4.6 6agb:E, 6ah3:E, 7c79:E, 7c7a:E
16 6c0f:A 394 84 0.0585 0.0533 0.2500 4.7 6cb1:A, 6em1:5, 6em3:5, 6em4:5, 7ohs:5, 7ohw:5, 7ohx:5, 8v83:I, 8v84:I, 5z3g:V
17 3mpg:A 426 49 0.0557 0.0469 0.4082 4.9 3mpg:B, 4yiw:A, 4yiw:B
18 8dqn:C 388 346 0.2117 0.1959 0.2197 5.1 8dqn:A, 8dqn:B, 8dqn:D, 8dqn:E, 8dqn:F, 8dqn:G, 8dqn:H
19 5k61:A 431 56 0.0474 0.0394 0.3036 5.5 5b62:A, 5k60:A, 5k62:A, 5k63:A, 5k66:A
20 8u4z:A 313 39 0.0334 0.0383 0.3077 6.4
21 6lt4:A 623 82 0.0669 0.0385 0.2927 7.0 6lt4:B, 6lt4:C, 6lt4:D, 6lt4:E, 6lt4:F, 6lt4:G, 6lt4:H, 6lt4:I, 6lt4:J, 6lt4:K, 6lt4:L, 6lt4:M, 6lt4:N
22 3ddd:A 281 187 0.1281 0.1637 0.2460 7.0
23 2vun:A 385 79 0.0724 0.0675 0.3291 7.7 2vun:B, 2vun:C, 2vun:D
24 3sqs:A 386 58 0.0529 0.0492 0.3276 8.1
25 3ty3:A 358 69 0.0585 0.0587 0.3043 8.4 3ty3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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