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BioLiP
>protein
PGIAVCNMDSAGGVILPGPNVKCFYKGQPFAVIGCAVAGHGRTPHDSARMIQGSVKMAIAGIPVCLQGSMASCGHTATGR
PNLTCGS

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6p1z:D 87 87 1.0000 1.0000 1.0000 2.24e-59 6p1z:H, 6p20:D
2 6pyu:A 930 59 0.1839 0.0172 0.2712 0.12 8bcy:A, 5dxu:A, 6ftn:A, 7jis:A, 5m6u:A, 6mum:A, 5ncy:A, 5ncz:A, 6ocu:A, 7oi4:AAA, 7oij:AAA, 7oil:AAA, 7ois:AAA, 8s3r:A, 5t2l:A, 5t8f:A, 5ubt:A, 2wxg:A, 2wxk:A
3 7uoo:x 504 40 0.1609 0.0278 0.3500 0.16 7ohq:x, 7oht:x, 7uqb:x, 7uqz:x, 7v08:x, 4wjv:C, 4wjv:D, 4wjv:A, 4wjv:B, 6ylg:x, 6ylh:x
4 5o83:A 794 63 0.1954 0.0214 0.2698 1.2 4ajw:B, 6dgt:A, 5is5:A, 7r2b:A, 4v0i:B
5 1mum:A 289 44 0.1609 0.0484 0.3182 1.3 1o5q:A, 1o5q:B, 1o5q:C, 1o5q:D, 1xg3:A, 1xg3:B, 1xg3:C, 1xg3:D
6 2a7r:A 338 34 0.1494 0.0385 0.3824 1.6 2a7r:B, 2a7r:C, 2bzn:A, 2bzn:B, 2bzn:C, 2bzn:D, 2bzn:E, 2bzn:F, 2bzn:G, 2bzn:H, 2c6q:A, 2c6q:B, 2c6q:D, 2c6q:C, 2c6q:E, 2c6q:F, 2c6q:H, 2c6q:G
7 7oj1:B 425 63 0.1839 0.0376 0.2540 1.9
8 8dba:J 510 49 0.1839 0.0314 0.3265 2.0 8dba:C, 8dba:B, 8dba:F, 8dba:I, 8dba:L
9 8fwj:A 552 49 0.1839 0.0290 0.3265 2.0 8db3:A, 8db3:B, 8db3:C, 8dba:A, 8dba:E, 8dba:D, 8dba:G, 8dba:H, 8dba:K, 8fwi:A, 8fwi:D, 8fwi:B, 8fwi:K, 8fwi:C, 8fwi:F, 8fwi:E, 8fwi:H, 8fwi:G, 8fwi:J, 8fwi:I, 8fwi:L, 8fwj:B, 8fwj:C, 8fwj:D, 8fwj:E, 8fwj:F, 8fwj:G, 8fwj:H, 8fwj:I, 8fwj:J, 8fwj:K, 8fwj:L
10 7spb:C1 217 46 0.1609 0.0645 0.3043 2.3 7oko:9, 7oko:z, 7oko:4, 7oko:8, 7oko:B, 7oko:F, 7oko:G, 7oko:P, 7oko:A, 7oko:L, 7oko:Q, 7oko:V, 7oko:Z, 7oko:a, 7oko:e, 7oko:f, 7oko:j, 7oko:k, 7oko:p, 7oko:u, 7oko:y, 7spb:D1, 7spb:C2, 7spb:D2, 7spb:C3, 7spb:D3, 7spb:C4, 7spb:D4, 7spb:C5, 7spb:D5, 7spb:C6, 7spb:D6, 7spb:C7, 7spb:D7, 7spb:C8, 7spb:D8, 7spb:C9, 7spb:D9, 7spb:C10, 7spb:D10, 7spb:C11, 7spb:D11, 7spb:C12, 7spb:D12, 7spb:C13, 7spb:D13, 7spi:C1, 7spi:D1, 7spi:C2, 7spi:D2, 7spi:C3, 7spi:D3, 7spi:C4, 7spi:D4, 7spi:C5, 7spi:D5, 7spi:C6, 7spi:D6, 7spi:C7, 7spi:D7, 7spi:C8, 7spi:D8, 7spi:C9, 7spi:D9, 7spi:C10, 7spi:D10, 7spi:C11, 7spi:D11, 7spi:C12, 7spi:D12, 7spi:C13, 7spi:D13
11 4a0g:D 709 41 0.1954 0.0240 0.4146 3.5
12 4a0g:A 769 41 0.1954 0.0221 0.4146 3.8 4a0f:B, 4a0g:B, 4a0h:A, 4a0h:B, 4a0r:A, 4a0r:B
13 4a0g:C 681 41 0.1954 0.0250 0.4146 4.2
14 4a0f:A 746 41 0.1954 0.0228 0.4146 4.2
15 2i2x:A 459 19 0.0805 0.0153 0.3684 5.8 2i2x:C, 2i2x:E, 2i2x:G, 2i2x:I, 2i2x:K, 2i2x:M, 2i2x:O
16 5ifu:B 445 11 0.0805 0.0157 0.6364 6.8 5ifu:A, 4wi1:A, 4wi1:B
17 6t7k:A 494 11 0.0805 0.0142 0.6364 6.9 7f96:A, 7f97:A, 7f97:B, 7f97:C, 7f97:D, 4olf:A, 4q15:A, 4q15:B, 7qb7:A, 7qc1:A, 7qc1:D, 7qc1:I, 7qc2:A, 7v9d:A, 4ydq:A, 4ydq:B
18 2hw2:A 138 50 0.1494 0.0942 0.2600 7.0
19 2xts:A 389 35 0.1264 0.0283 0.3143 7.8 2xts:C
20 4nn2:A 124 45 0.1724 0.1210 0.3333 9.0 4nn2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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