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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIR
GSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTN
CPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHF
QDWRCVNFSFCQDLHHKCKNCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCP

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7sl6:A 819 298 0.9730 0.3516 0.9664 0.0 7mqs:F, 7mqs:E, 7sl1:A, 7sl1:B, 7sl2:A, 7sl2:B, 7sl6:B, 7sl7:A, 7sl7:B
2 7yq5:E 799 301 0.9899 0.3667 0.9734 0.0 7pg0:A, 7pg2:A, 7pg3:A, 7pg4:A, 7sl4:B, 7yq6:E, 7yq6:F
3 8guy:F 835 301 0.9899 0.3509 0.9734 0.0 6ce7:P, 6ce9:M, 6ce9:P, 6ceb:M, 6ceb:P, 8guy:E, 6hn5:E, 5j3h:E, 7kd6:E, 7kd6:K, 7kd6:Q, 7kd6:W, 5kqv:E, 5kqv:F, 7mqo:F, 7mqo:E, 7mqr:E, 7mqr:F, 4oga:E, 7pg0:B, 7pg2:B, 7pg3:B, 7pg4:B, 7qid:C, 7sl3:A, 7sl3:B, 6sof:A, 6sof:C, 7u6e:F, 7u6e:E, 6vep:E, 6vep:K, 6vep:Q, 6vep:W, 6veq:K, 6veq:E, 3w11:E, 3w12:E, 3w13:E, 4xss:E, 4xst:E, 7yq3:F, 7yq3:E, 7yq4:E, 7yq4:F, 7yq5:F
4 7md4:B 778 296 0.9628 0.3663 0.9628 0.0
5 7sl4:A 786 298 0.9189 0.3461 0.9128 0.0 8dtm:B
6 7md4:A 724 288 0.8209 0.3356 0.8438 3.58e-169
7 6jk8:B 801 297 0.5777 0.2135 0.5758 1.46e-113
8 6jk8:B 801 119 0.0980 0.0362 0.2437 1.5
9 6jk8:A 823 297 0.5709 0.2053 0.5690 6.86e-109 1igr:A, 7v3p:B
10 6jk8:A 823 119 0.0980 0.0352 0.2437 1.0 1igr:A, 7v3p:B
11 8cls:B 853 294 0.4054 0.1407 0.4082 5.20e-63
12 8cls:A 837 291 0.3953 0.1398 0.4021 1.50e-60
13 8u4j:B 600 333 0.3649 0.1800 0.3243 6.99e-29
14 8u4j:B 600 303 0.1993 0.0983 0.1947 2.58e-10
15 5xwd:A 611 327 0.3007 0.1457 0.2722 1.03e-18
16 5xwd:A 611 318 0.2669 0.1293 0.2484 7.12e-14
17 6btm:B 948 50 0.0507 0.0158 0.3000 0.28
18 9b4h:A 1908 83 0.0845 0.0131 0.3012 1.2 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
19 9b4h:A 1908 37 0.0473 0.0073 0.3784 3.9 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
20 4h7u:A 577 27 0.0372 0.0191 0.4074 7.2
21 8hw1:A 241 40 0.0473 0.0581 0.3500 9.4 8hw1:K, 8hw1:B, 8hw1:C, 8hw1:D, 8hw1:E, 8hw1:F, 8hw1:G, 8hw1:H, 8hw1:I, 8hw1:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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