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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCPYWMRVILASNRGTLMALGISPIVTSGLIMQLLAGATPKDRALFN
GAQKLFGMTITIGQSIVYVMTVCLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGR
GMEFEGAIIALFHLLALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIIL
QSALVSNLYVISQMLSARPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ
MVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS

The query sequence (length=388) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bf9:C 385 388 0.9897 0.9974 0.9897 0.0 6z3t:A
2 6ftg:x 426 420 0.9845 0.8967 0.9095 0.0 8btk:SX, 6fti:x, 6ftj:x, 3j7q:1, 3j7r:1, 3jc2:1, 8oj0:1, 8oj8:1, 6r7q:XX, 6w6l:1, 7zl3:A
3 2wwb:A 476 456 0.9897 0.8067 0.8421 0.0 8b5l:s, 8b6c:K, 4cg6:A, 8dnx:A, 8dny:A, 8dnz:A, 8do0:A, 8do1:A, 8do2:A, 8do3:A, 8rjb:1, 8rjc:1, 8rjd:1, 7tm3:1, 7tut:1
4 8b6l:A 425 427 0.9485 0.8659 0.8618 0.0
5 3bo1:A 442 447 0.3763 0.3303 0.3266 1.07e-69 3dkn:A, 4v4n:AX, 4v7i:AA
6 2ww9:A 490 459 0.3376 0.2673 0.2854 5.37e-50 2wwa:A
7 2zjs:Y 415 375 0.2165 0.2024 0.2240 1.17e-05
8 6dt7:B 404 109 0.0644 0.0619 0.2294 2.2 6dt8:B, 6dta:B
9 4c9f:D 134 50 0.0335 0.0970 0.2600 4.0 4c9f:A, 4c9f:B, 4c9f:C, 4caj:A, 4caj:B, 4caj:C, 4caj:D, 3zhg:A, 3zhg:B, 3zhg:C, 3zhg:D
10 7l3o:B 401 114 0.0799 0.0773 0.2719 4.3 7l3o:A, 7l3o:C, 7l3o:D
11 6rxx:UV 1061 70 0.0644 0.0236 0.3571 5.0
12 8sxz:c 699 42 0.0387 0.0215 0.3571 8.9 8sxz:b, 8sxz:f, 8sxz:g, 8sz8:b, 8sz8:c, 8sz8:f, 8sz8:g, 8t0k:b, 8t0k:c, 8t0k:f, 8t0k:g, 8t0r:b, 8t0r:c, 8t0r:f, 8t0r:g, 8tym:c, 8tym:f, 8tym:B, 8tym:C, 8tyn:c, 8tyn:f, 8tyn:C, 8tyn:F
13 3j6b:W 112 50 0.0361 0.1250 0.2800 9.1 5mrc:W, 5mre:W, 5mrf:W
14 3rph:A 277 18 0.0258 0.0361 0.5556 9.5 3rpz:A, 3rq2:A, 3rq5:A, 3rq6:A, 3rq8:A, 3rqh:A, 3rqq:A, 3rqx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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