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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PELANKLDPNAKEIDEPVLKAATAAKEEDGKYFDKDGHPTFHITNDGKKVDWFTYSGYRRYHAECHVCHGPDGMGSTYAP
ALKDSLKRLSYEEFYGILAGGKQENQVMPAFGDNKNVMCYANDLYVYLRARAAGAWGRARPGEKEDKPESAKTVEKECL

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6onq:A 159 159 1.0000 1.0000 1.0000 4.73e-119
2 7w2j:C 418 106 0.1950 0.0742 0.2925 0.079 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
3 8snh:G 304 73 0.1384 0.0724 0.3014 0.30
4 8snh:G 304 70 0.1321 0.0691 0.3000 9.3
5 8smr:G 312 60 0.1258 0.0641 0.3333 0.69
6 1kv9:A 664 59 0.1132 0.0271 0.3051 0.70
7 8gy2:A 723 45 0.0881 0.0194 0.3111 1.2
8 5djq:C 303 28 0.0755 0.0396 0.4286 2.0 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
9 8yts:A 83 27 0.0629 0.1205 0.3704 2.6 8yts:B
10 3dmi:A 87 91 0.1509 0.2759 0.2637 3.2
11 5xdh:A 86 18 0.0566 0.1047 0.5000 4.2 5xdh:B, 5xdh:C, 5xdh:D
12 4j20:A 88 66 0.1132 0.2045 0.2727 4.7 4j20:B
13 5mq6:A 636 70 0.1384 0.0346 0.3143 4.7
14 5uam:A 440 108 0.1447 0.0523 0.2130 5.4 5uam:B, 5uas:A, 5uas:B
15 6f0k:E 182 72 0.1321 0.1154 0.2917 5.7
16 6lod:E 157 56 0.1069 0.1083 0.3036 6.3 6loe:E
17 5exk:A 306 53 0.1132 0.0588 0.3396 7.1 5exi:A, 5exj:A, 5exk:C, 5exk:E, 5exk:G, 5exk:I, 5exk:K
18 6p63:C 595 113 0.1635 0.0437 0.2301 8.6 6p63:A, 6p63:B, 6p63:D, 6xrc:A, 6xrc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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