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BioLiP
>protein
PEFMDTCFFCGAVDLSDSSSMRYETLSAKVPSSQKTVSLVLTHLANCIQTQLDLKPGARLCPRCFQELSDYDTIMVNLMT
TQKRLTTQLKLD

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7poh:B 92 92 1.0000 1.0000 1.0000 1.29e-64 7poh:A
2 7o7g:A 627 52 0.1630 0.0239 0.2885 0.27 4lm8:A, 8qbq:A, 8qbz:A, 8qc9:A, 7qth:A
3 7sa4:8 203 61 0.2283 0.1034 0.3443 0.53
4 2drp:D 65 52 0.1630 0.2308 0.2885 0.86 2drp:A
5 6u05:A 413 49 0.1630 0.0363 0.3061 2.5 6tzm:A, 6tzo:A, 6tzx:A, 6u00:B, 6u03:A, 5u32:A
6 5aaz:A 31 19 0.0870 0.2581 0.4211 3.0
7 8a3t:U 114 60 0.1957 0.1579 0.3000 3.1 8a5y:U
8 5f4b:A 173 24 0.0978 0.0520 0.3750 5.0 5f4b:B
9 7oik:A 4426 24 0.1304 0.0027 0.5000 5.3 7oim:A, 6tax:A, 6tay:A
10 2xrg:A 758 26 0.1087 0.0132 0.3846 5.5
11 3way:A 787 26 0.1087 0.0127 0.3846 5.5 8c3o:B, 8c3p:A, 8c3p:B, 8c4w:A, 8c7r:A, 5dlv:A, 5dlv:B, 5dlw:A, 5inh:A, 5l0b:A, 5l0b:B, 5l0e:A, 5l0e:B, 5l0k:A, 5l0k:B, 6leh:A, 5lqq:A, 5m0d:A, 5m0e:A, 5m0m:A, 5m0s:A, 7mfh:A, 5mhp:A, 3nkn:A, 3nko:A, 3nkq:A, 3nkr:A, 5ohi:A, 5olb:A, 7p0k:AAA, 7p4j:A, 7p4o:A, 3waw:A, 6y5m:A, 4zg7:A
12 5s9m:A 809 26 0.1087 0.0124 0.3846 5.5 8c3o:A, 5dlt:A, 9ent:A, 9eu5:A, 5hrt:A, 5ijq:A, 5ijs:A, 5lia:A, 3nkm:A, 3nkp:A, 5s9l:A, 5s9n:A, 6w35:A, 3wav:A, 3wax:A, 2xr9:A, 7z0n:AAA, 7z3k:AAA, 7z3l:AAA
13 5b0s:B 355 42 0.1304 0.0338 0.2857 9.6 5b0q:A, 5b0q:B, 5b0r:A, 5b0r:B, 5b0s:A
14 1wog:A 303 18 0.0978 0.0297 0.5000 9.8 1wog:B, 1wog:C, 1wog:D, 1wog:E, 1wog:F, 1woi:A, 1woi:B, 1woi:C, 1woi:D, 1woi:E, 1woi:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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