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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PDNFTAAAQDLAQSLDANTVTFPANISSMPEFRNWAKGKIDLDSDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFS
VDAEIREIYNEECPVVTDVSVPLDGRQWSLSIFSFPMFRTAYVAVANVENKEMSLDVVNDLIEWLNNLADWRYVVDSEQW
INFTNDTTYYVRIRVLRPTYDVPDPTEGLVRTVSDYRLTYKAITCEANMPTLVDQGFWIGGQYALTPTSLPQYDVSEAYA
LHTLTFARPSSAAALAFVWAGLPQGGTAPAGTPAWEQASSGGYLTWRHNGTTFPAGSVSYVLPEGFALERYDPNDGSWTD
FASAGDTVTFRQVAVDEVVVTNNPAGGGSAPTFTVRVPPSNAYTNTVFRNTLLETRPSSRRLELPMPPADFGQTVANNPK
IEQSLLKETLGCYLVHSKMRNPVFQLTPASSFGAVSFNNPGYERTRDLPDYTGIRDSFDQNMSTAVAHFRSLSHSCSIVT
KTYQGWEGVTNVNTPFGQFAHAGLLKNEEILCLADDLATRLTGVYPATDN

The query sequence (length=530) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3s6p:C 536 530 1.0000 0.9888 1.0000 0.0 3s6p:B
2 1ohf:C 590 531 0.6698 0.6017 0.6685 0.0 7anm:A, 7anm:B, 7anm:C, 1ohf:A, 1ohf:B, 1ohf:D
3 7xpg:A 463 211 0.0792 0.0907 0.1991 0.036 7xpg:B, 7xpg:C
4 3euj:A 437 88 0.0434 0.0526 0.2614 0.20
5 6sga:CH 222 55 0.0358 0.0856 0.3455 0.84 7pua:CH, 6sgb:CH
6 6j9f:C 1296 102 0.0509 0.0208 0.2647 3.2
7 6j9e:C 1288 102 0.0509 0.0210 0.2647 3.5
8 4nxv:C 337 81 0.0472 0.0742 0.3086 5.3 4nxu:A, 4nxu:B, 4nxu:C, 4nxu:D, 4nxv:A, 4nxv:B, 4nxv:D, 4nxw:A, 4nxx:A, 4oag:A, 4oag:B
9 2c03:B 297 68 0.0358 0.0640 0.2794 8.1 2c03:A, 2cnw:A, 2cnw:B, 2cnw:C, 2j7p:A, 2j7p:B, 1jpj:A, 1jpn:B, 1jpn:A, 1ls1:A, 1ng1:A, 2ng1:A, 1o87:A, 1o87:B, 1okk:A
10 4r5e:A 343 34 0.0283 0.0437 0.4412 8.2
11 4eqb:A 323 72 0.0340 0.0557 0.2500 8.5 4eqb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218