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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PDMKRSLRLMKKEEKSKKLEVPLAKRQQDRLMREAAYKKTNETLDRWIETVKHNRRAEHLVFPLAQNAHDRGLDASELQP
ITQKTSGTELEQTILAIMEESDYKLKDVIINEKRVKKNDKYLATGLPHPFESQQQYERSLRLPVGPEWMTKETFQDATKP
RVIIKQGIIAPMSKPMY

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rxu:UN 177 177 1.0000 1.0000 1.0000 5.49e-131 5oql:K, 6rxt:UN, 6rxv:UN, 6rxy:UN, 6rxz:UN
2 7ajt:UN 147 154 0.3446 0.4150 0.3961 2.22e-33 6zqa:UN, 6zqb:UN, 6zqc:UN
3 6ke6:RQ 226 214 0.3898 0.3053 0.3224 3.18e-30 7d5s:RQ, 6lqp:RQ, 6lqq:RQ, 6lqr:RQ, 6lqs:RQ, 6lqt:RQ, 6lqu:RQ, 6lqv:RQ
4 7suk:SS 197 201 0.3446 0.3096 0.3035 1.25e-25 5wlc:SS
5 7d5t:RQ 339 75 0.2090 0.1091 0.4933 9.63e-19
6 7d5t:RQ 339 89 0.1808 0.0944 0.3596 3.41e-10
7 7d4i:RQ 339 75 0.2090 0.1091 0.4933 1.32e-18
8 7d4i:RQ 339 89 0.1808 0.0944 0.3596 4.33e-10
9 7d63:RQ 275 72 0.1751 0.1127 0.4306 5.86e-14
10 7d63:RQ 275 89 0.1808 0.1164 0.3596 2.54e-10
11 7mqa:SS 350 72 0.1695 0.0857 0.4167 2.98e-11
12 7mqa:SS 350 92 0.1977 0.1000 0.3804 4.41e-08
13 6gzd:A 297 40 0.0734 0.0438 0.3250 5.0 5fqd:C, 5fqd:F, 8g66:C
14 8pv6:CR 516 23 0.0678 0.0233 0.5217 5.2 8pv8:CR
15 8pv4:CR 390 23 0.0678 0.0308 0.5217 5.5
16 6ynv:e 417 52 0.0904 0.0384 0.3077 6.7 6ynx:e, 6ynx:E, 6yny:e, 6yny:E, 6ynz:e, 6ynz:E, 6ynz:e3, 6ynz:E3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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