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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PAIVCQSALEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPT
RPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISVEATLAACQVAGKIIAHINPQMPRTHGDG
FIHIDRFAAVYEQSASLPIHSFATGDAVSLAIGQHVAELVRDGDCLQMGIGAIPDAVLSCLTGHKDLGVHTELFSDGILQ
LVEKGVINNTKKRFYPGKLVTGFALGSQKLYDYVDDNPAVIFMDIEQVNDTSIIRKNPNVMAINSALQVDLTGQVCADSI
GTKIYSGVGGQMDFIRGAGLSEGGRSVIALPSTAAGGRISRIASVLSPGAGVVTTRAHVHYIVTEYGAANLKGRSLRERA
QALINIAHPDFREQLSRDAFEVWGLNL

The query sequence (length=427) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2oas:A 427 427 1.0000 1.0000 1.0000 0.0 2oas:B
2 3qdq:A 447 430 0.4122 0.3937 0.4093 8.24e-111
3 4n8i:A 440 422 0.3934 0.3818 0.3981 1.01e-86 4n8i:B, 4n8j:C, 4n8j:D
4 2nvv:A 496 392 0.2436 0.2097 0.2653 2.64e-25 2nvv:B, 2nvv:C, 2nvv:D, 2nvv:E
5 4eu5:A 513 227 0.1546 0.1287 0.2907 1.65e-15 5ddk:A, 5ddk:B, 5dw4:B, 5dw4:A, 5dw5:A, 5dw5:B, 5dw6:A, 5dw6:B, 5e5h:A, 5e5h:B, 4eu3:B, 4eu4:A, 4eu4:B, 4eu5:B, 4eu6:A, 4eu6:B, 4eu7:A, 4eu7:B, 4eu8:A, 4eu8:B, 4eu9:A, 4eu9:B, 4eua:A, 4eua:B, 4eub:A, 4eub:B, 4euc:A, 4euc:B, 4eud:A, 4eud:B
6 3qfe:A 305 98 0.0726 0.1016 0.3163 0.020
7 7ac8:B 202 47 0.0351 0.0743 0.3191 1.6 7ac8:D, 7ac8:F, 3zr4:B, 3zr4:D
8 6f0x:B 398 39 0.0375 0.0402 0.4103 3.7 6f0x:A, 6f0x:C, 6f0x:D, 6f0x:E, 7l9p:A, 7l9p:B, 7l9p:C, 7l9p:D, 7l9p:E
9 5d0n:A 274 100 0.0726 0.1131 0.3100 4.2 5d1f:A
10 5n0k:A 1034 99 0.0562 0.0232 0.2424 5.8 5n4l:A, 5n4l:B
11 8t8s:B 664 108 0.0585 0.0377 0.2315 6.6 3f6k:A, 5mrh:A, 5mri:A, 4msl:A, 4n7e:A, 5nmr:A, 4po7:A, 8t8r:A, 8t8s:A, 6x3l:A, 6x48:A, 6x4h:A
12 8owy:A 172 53 0.0422 0.1047 0.3396 7.0 8owy:B
13 6wmt:S 202 158 0.0843 0.1782 0.2278 8.5 6weg:D
14 8a25:A 289 136 0.0820 0.1211 0.2574 8.6 8a26:A
15 4a0s:A 445 26 0.0258 0.0247 0.4231 9.2 4a0s:D, 4a0s:B, 4a0s:C
16 9fjl:A 168 47 0.0375 0.0952 0.3404 9.5
17 3lez:A 260 50 0.0351 0.0577 0.3000 9.8
18 7esr:A 378 59 0.0445 0.0503 0.3220 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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