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BioLiP
>protein
PAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLA
KDDQLKVHGF

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a09:Z 110 90 1.0000 0.8182 1.0000 8.91e-63 9bln:W, 4kzx:l, 4kzy:l, 8pj1:p, 8ppk:p, 8ppl:Ip, 7qp6:p, 8xxn:C1, 6ybw:p, 6zmw:p, 6zp4:Z, 6zvj:N
2 6gsm:m 96 90 0.5889 0.5521 0.5889 1.27e-36 8cah:m, 6gsn:m, 3j80:j, 3j81:m, 3jam:j, 3jap:m, 4uer:F, 6zce:m
3 8s8f:m 77 87 0.4778 0.5584 0.4943 7.66e-26 8s8i:m
4 4bts:AF 89 83 0.4444 0.4494 0.4819 3.49e-24 4bts:BF, 4bts:CF, 4bts:DF, 4v5o:AF, 4v5o:BF
5 7ase:V 97 83 0.3667 0.3402 0.3976 5.58e-21
6 5jb3:1 83 82 0.3222 0.3494 0.3537 3.44e-07 5jbh:1
7 5zcy:A 83 76 0.2667 0.2892 0.3158 3.42e-05
8 3pgx:A 270 74 0.2333 0.0778 0.2838 0.83 3pgx:B, 3pgx:C, 3pgx:D
9 8xr6:Q 143 70 0.1778 0.1119 0.2286 1.3 8xr6:q
10 4hjw:C 378 40 0.1333 0.0317 0.3000 2.6 4hjw:A, 4hjw:B
11 2vs1:A 398 43 0.1333 0.0302 0.2791 4.0 2jjq:A
12 8pdv:A 1027 29 0.1444 0.0127 0.4483 5.5 8pd8:A, 8pd8:B, 8pd9:A, 8pdu:A, 8pdu:B
13 8xq7:A 1041 29 0.1444 0.0125 0.4483 5.5 8xq7:B
14 8otq:A 1051 29 0.1444 0.0124 0.4483 5.5 8otq:B, 8otw:B, 8xq8:A
15 1zt2:A 327 67 0.2111 0.0581 0.2836 6.7 5of3:A, 5of3:D, 5ofn:A, 1zt2:C
16 5hyc:A 130 49 0.1333 0.0923 0.2449 7.7
17 4zyj:D 392 16 0.1111 0.0255 0.6250 8.1 4zyj:A, 4zyj:B, 4zyj:C
18 8jxu:A 1410 28 0.1111 0.0071 0.3571 8.1 8jxq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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