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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PAGRQAGQQATVDRLRTQVTGFLSGALGKLQALSAQNMDPELAQFRVLDVDRAIMPLLIVAENARNPGLNLVPLHMDMAE
DEEVRTQPPMAGSRHIAEFVASARPGRYRAVIDDGSHTRAADIRKDASGTSVIVVDPLRKEKDESAYVDYADNVNMEFGE
HAKCAFIPVDIQKSFFDCRILSLSLALKMHDKDDAFAAFHETLRNGGDPSHHVSRAQQTEELGATLVLDGAPLVDARMMK
HGQAASSVSRYLGNHPEQSTVPVNKRNETLGERTTRHLVKRKVRNRETKEITFSNSVEQKRIALLNRAASYVNSAPPPVV
MRMAKLLQDSLLD

The query sequence (length=333) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5w3x:C 342 339 0.9790 0.9532 0.9617 0.0 5w3t:A, 5w3t:B, 5w3t:C, 5w3t:D, 5w3x:A, 5w3y:A, 5w3y:B, 5w3y:C, 5w3y:D, 5w40:A, 5w40:B, 5w40:C, 5w40:D
2 6be0:A 266 262 0.2042 0.2556 0.2595 1.53e-07
3 5klq:A 324 294 0.2162 0.2222 0.2449 0.006 5klp:A, 5klp:B, 5klp:C, 5klq:C, 5klq:B
4 5xbl:A 1320 94 0.0691 0.0174 0.2447 1.3
5 2yd4:A 203 45 0.0511 0.0837 0.3778 1.5
6 5z74:A 441 87 0.0691 0.0522 0.2644 1.7 5z74:B
7 3qhx:A 377 38 0.0420 0.0371 0.3684 3.8 3qhx:B
8 3ssn:B 350 48 0.0541 0.0514 0.3750 4.9
9 7zkq:T 351 42 0.0480 0.0456 0.3810 7.5
10 7kb1:A 428 65 0.0601 0.0467 0.3077 7.5 7kb1:B, 7kb1:C, 7kb1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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