Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKALGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6y2x:A 231 76 0.9737 0.3203 0.9737 3.74e-48 6ir0:A, 6y22:A, 6y3j:A
2 1v87:A 114 76 0.8684 0.5789 0.8684 1.18e-45
3 6y5p:B 229 74 0.6053 0.2009 0.6216 3.43e-30 6y5n:A, 6y5n:B, 6y5p:A
4 6y2x:B 177 66 0.6974 0.2994 0.8030 1.67e-22
5 8i3x:A 60 65 0.2368 0.3000 0.2769 0.004 8i3x:B
6 1f62:A 51 31 0.1974 0.2941 0.4839 0.044
7 7xyz:B 456 30 0.1447 0.0241 0.3667 0.044 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
8 7jzv:A 253 31 0.1842 0.0553 0.4516 0.092 8grq:K, 1jm7:A, 7lyb:M
9 7xga:A 126 31 0.1579 0.0952 0.3871 0.74 6vfo:A
10 6a3z:A 56 72 0.2895 0.3929 0.3056 0.91
11 5a31:B 84 71 0.2632 0.2381 0.2817 2.1 5g04:B, 5g05:B, 9gaw:C, 5jg6:A, 5jg6:D, 2mt5:A, 7qe7:C, 4r2y:A, 4r2y:B, 4r2y:C, 4r2y:D, 8s4g:C, 6tm5:B, 6tnt:B, 4ui9:B
12 2ecw:A 85 31 0.1579 0.1412 0.3871 3.0
13 5vab:A 54 29 0.1711 0.2407 0.4483 4.5
14 3aln:A 270 46 0.1842 0.0519 0.3043 9.5 3aln:B
15 3alo:A 289 46 0.1842 0.0484 0.3043 9.6
16 5ech:A 569 68 0.2368 0.0316 0.2647 9.6 5ech:D, 5eci:A, 5eci:D, 5eck:A, 5eck:D, 5ecl:A, 5ecl:D, 5ecm:A, 5ecm:D, 5ecn:A, 5ecn:D, 5eco:A, 5eco:D, 5ecp:A, 5ecp:D, 5ecq:A, 5ecq:D, 5ecr:A, 5ecr:D, 4epl:A, 5gzz:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218