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BioLiP
>protein
NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rwg:A 157 42 0.9286 0.2484 0.9286 1.45e-24 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
2 2ec7:A 49 41 0.6905 0.5918 0.7073 1.30e-17
3 2a51:A 39 39 0.5238 0.5641 0.5641 8.01e-12
4 2bl6:A 37 35 0.4524 0.5135 0.5429 1.46e-06
5 7c4c:A 332 38 0.4524 0.0572 0.5000 1.72e-04 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
6 7c4c:A 332 37 0.3333 0.0422 0.3784 2.1 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
7 5w0n:A 379 23 0.3095 0.0343 0.5652 0.005 5w0m:A, 5w0m:C, 5w0n:B
8 5w0b:A 334 20 0.2857 0.0359 0.6000 0.012
9 7s7b:F 352 14 0.2381 0.0284 0.7143 0.017 7s7b:B, 7s7c:B
10 7s7b:F 352 17 0.2143 0.0256 0.5294 0.064 7s7b:B, 7s7c:B
11 2ihx:A 50 43 0.3810 0.3200 0.3721 0.20
12 2li8:A 63 38 0.3095 0.2063 0.3421 0.24
13 2cqf:A 63 40 0.3095 0.2063 0.3250 0.25
14 5udz:A 139 37 0.3095 0.0935 0.3514 0.30 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
15 6lum:A 539 25 0.1905 0.0148 0.3200 0.57 6lum:J, 6lum:P
16 6bk8:O 229 17 0.2143 0.0393 0.5294 0.65
17 6bk8:O 229 20 0.2381 0.0437 0.5000 2.4
18 6exn:c 204 17 0.2143 0.0441 0.5294 0.70
19 6exn:c 204 20 0.2381 0.0490 0.5000 2.6
20 2ysa:A 55 14 0.1905 0.1455 0.5714 0.85
21 2ysa:A 55 14 0.2143 0.1636 0.6429 1.0
22 8opp:A 670 16 0.2143 0.0134 0.5625 0.98
23 8opt:A 783 16 0.2143 0.0115 0.5625 0.98 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
24 3nyb:B 64 21 0.1905 0.1250 0.3810 3.0
25 3zt9:A 192 26 0.2143 0.0469 0.3462 3.7
26 7b9v:c 37 17 0.2143 0.2432 0.5294 3.9
27 1kea:A 217 25 0.3095 0.0599 0.5200 4.0
28 4f3x:A 476 26 0.1905 0.0168 0.3077 5.9 4f3x:B, 4f3x:C, 4f3x:D
29 8hir:A 918 16 0.1429 0.0065 0.3750 9.7 8hir:B, 8hir:C, 8hir:D, 8hk6:A, 8hk6:B, 8hk6:C, 8hk6:D, 8hkf:A, 8hkf:B, 8hkf:C, 8hkf:D, 8hkk:A, 8hkk:B, 8hkk:C, 8hkk:D, 8hkm:A, 8hkm:B, 8hkm:C, 8hkm:D, 8hkq:D, 8hkq:A, 8hkq:C, 8hkq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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