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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NTLQPTEAAYIAGFLDGDGSIYAKLIPRPDYKDIKYQVSLAISFIQRKDKFPYLQDIYDQLGKRGNLRKDRGDGIADYTI
IGSTHLSIILPDLVPYLRIKKKQANRILHIINLYPQAQKNPSKFLDLVKIVDDVQNLNKRADELKSTNYDRLLEEFLKAG
KIESSPTGSGSGSKKNTLQPTEAAYIAGFLDGDGSIYAKLIPRPDYKDIKYQVSLAISFIQRKDKFPYLQDIYDQLGKRG
NLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQANRILHIINLYPQAQKNPSKFLDLVKIVDDVQNLNKRADELK
STNYDRLLEEFLKAGKIE

The query sequence (length=338) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fd2:A 338 338 1.0000 1.0000 1.0000 0.0 2fld:B, 3mip:A, 3mip:B
2 2fld:A 161 161 0.4704 0.9876 0.9876 4.33e-109 3ko2:A, 3ko2:B, 3ko2:F, 3ko2:G, 1m5x:A, 1m5x:B, 3mis:A, 3mis:B
3 2fld:A 161 161 0.4704 0.9876 0.9876 4.33e-109 3ko2:A, 3ko2:B, 3ko2:F, 3ko2:G, 1m5x:A, 1m5x:B, 3mis:A, 3mis:B
4 3mxa:A 301 304 0.2959 0.3322 0.3289 3.24e-39 4aab:A, 4aab:B, 4aad:A, 4aad:B, 4aae:A, 4aae:B, 4aaf:A, 4aaf:B, 4aag:A, 4aag:B, 4aqu:A, 4aqu:B, 4aqx:A, 4aqx:B, 1bp7:A, 1bp7:B, 1bp7:C, 1bp7:D, 6fb0:A, 6fb0:B, 6fb1:A, 6fb1:B, 6fb2:A, 6fb2:B, 6fb5:A, 6fb5:B, 6fb6:A, 6fb6:B, 6fb7:A, 6fb7:B, 6fb8:A, 6fb8:B, 6fb9:A, 6fb9:B, 1g9y:A, 1g9y:B, 1g9z:A, 1g9z:B, 2i3p:A, 2i3p:B, 2i3q:A, 2i3q:B, 3mx9:A, 3mxb:A, 3mxb:B, 3mxb:R, 3mxb:S, 1n3e:A, 1n3e:B, 1n3e:G, 1n3e:H, 1n3f:A, 1n3f:B, 1n3f:G, 1n3f:H, 1t9i:A, 1t9i:B, 1t9j:A, 1t9j:B, 1u0c:A, 1u0c:B, 1u0d:A, 1u0d:B, 2vbj:A, 2vbj:B, 2vbl:A, 2vbl:B, 2vbn:A, 2vbn:B, 2vbo:A, 2vbo:B, 2xe0:A, 2xe0:B
5 5a72:B 158 126 0.1420 0.3038 0.3810 7.65e-21 5a72:A, 5a74:A, 5a74:B, 5a77:A, 5a77:B, 5a78:A, 5a78:B
6 5a72:B 158 126 0.1420 0.3038 0.3810 7.65e-21 5a72:A, 5a74:A, 5a74:B, 5a77:A, 5a77:B, 5a78:A, 5a78:B
7 1mow:A 248 130 0.1538 0.2097 0.4000 4.52e-20 1mow:D, 1mow:G, 1mow:J
8 1mow:A 248 130 0.1538 0.2097 0.4000 4.52e-20 1mow:D, 1mow:G, 1mow:J
9 4lox:A 300 268 0.1893 0.2133 0.2388 1.10e-06 5e5o:A, 5e5s:A, 5e63:A, 5e67:A, 4z1z:A, 4z1z:B, 4z20:A, 4z20:D
10 4lox:A 300 89 0.0621 0.0700 0.2360 1.7 5e5o:A, 5e5s:A, 5e63:A, 5e67:A, 4z1z:A, 4z1z:B, 4z20:A, 4z20:D
11 4yhx:A 294 210 0.1331 0.1531 0.2143 1.6
12 5esp:A 292 99 0.0828 0.0959 0.2828 2.6 5esp:B
13 5esp:A 292 99 0.0828 0.0959 0.2828 2.6 5esp:B
14 5wtk:A 1215 42 0.0385 0.0107 0.3095 3.3 7dmq:A
15 5wtk:A 1215 42 0.0385 0.0107 0.3095 3.3 7dmq:A
16 6bci:A 292 137 0.0888 0.1027 0.2190 8.2 6bce:A, 6bcf:D, 6bcf:A, 6bcf:G, 6bcf:J, 6bcg:D, 6bcg:A, 6bcg:G, 6bcg:J, 6bch:A, 6bch:D, 6bch:H, 6bch:L, 6bcn:A, 6bcn:C, 6bcn:G, 6bcn:J, 6bct:A, 3r7p:A
17 6bci:A 292 137 0.0888 0.1027 0.2190 8.2 6bce:A, 6bcf:D, 6bcf:A, 6bcf:G, 6bcf:J, 6bcg:D, 6bcg:A, 6bcg:G, 6bcg:J, 6bch:A, 6bch:D, 6bch:H, 6bch:L, 6bcn:A, 6bcn:C, 6bcn:G, 6bcn:J, 6bct:A, 3r7p:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218