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BioLiP
>protein
NTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGKDLSPRWYFYYLGTGPEAGLPYGANKDGII
WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFY

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7acs:A 140 125 1.0000 0.8643 0.9680 3.51e-85 7act:A, 8iv3:D, 8j6x:A, 8j6x:D, 6vyo:A, 6vyo:B, 6vyo:C, 6vyo:D, 6wkp:B, 6wkp:C, 6wkp:D, 7xwz:A, 7xwz:B, 7xx1:A, 7xx1:B, 7xx1:C, 7xx1:D
2 6wkp:A 103 119 0.8430 0.9903 0.8571 4.05e-67
3 6lz8:B 130 124 0.6033 0.5615 0.5887 5.92e-46 6kl5:A, 6kl6:B
4 6lz8:D 112 120 0.5537 0.5982 0.5583 1.53e-40 7dyd:D, 6kl5:C, 6kl6:D, 6lnn:D, 6lz6:D
5 4kxj:A 135 124 0.4711 0.4222 0.4597 2.20e-28 4li4:A, 4lm7:A, 4lm9:A, 4lmc:A, 4lmt:A
6 4fe2:B 235 52 0.1488 0.0766 0.3462 0.32 4fe2:A, 4fgr:A, 4fgr:B, 4nye:A, 4nye:B
7 3lya:A 318 34 0.1157 0.0440 0.4118 2.1
8 6o62:A 169 82 0.1736 0.1243 0.2561 7.7
9 6omp:A 356 78 0.1818 0.0618 0.2821 8.3 6omp:B, 6omq:A, 6omq:B, 6omr:A, 6omr:B
10 4zs9:B 378 42 0.0992 0.0317 0.2857 9.6 4zs9:A, 4zza:A, 4zza:B, 4zze:A, 4zze:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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