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BioLiP
>protein
NSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHR
SAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRM
YILQSKYLNR

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6e1x:C 176 170 1.0000 0.9659 1.0000 1.29e-124 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
2 6vfn:A 167 166 0.5647 0.5749 0.5783 1.86e-68 6vfn:F, 6vfn:B, 6vfn:C, 6vfn:D, 6vfn:E, 6vfn:H, 6vfn:I, 6vfn:J, 6vfn:G, 6vfn:L, 6vfn:K
3 6d72:B 176 170 0.5882 0.5682 0.5882 2.73e-68 6d72:A
4 3wr7:A 170 166 0.5882 0.5882 0.6024 8.71e-68 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
5 2vi7:C 165 167 0.2882 0.2970 0.2934 5.24e-12
6 8q6u:B 166 165 0.2412 0.2470 0.2485 7.96e-10 8q6u:A
7 2ge3:A 164 153 0.2412 0.2500 0.2680 2.75e-09 2ge3:B, 2ge3:C
8 3ld2:B 162 127 0.1941 0.2037 0.2598 1.63e-06 3ld2:A, 3ld2:C, 3ld2:D
9 6c32:A 209 77 0.1471 0.1196 0.3247 3.91e-06 6c37:A
10 4xpl:A 141 111 0.1824 0.2199 0.2793 8.41e-06
11 3owc:A 172 58 0.1118 0.1105 0.3276 8.63e-05 3owc:B
12 6th0:A 176 69 0.1294 0.1250 0.3188 4.79e-04 6tgx:A, 6tgx:B, 6th0:B
13 2i79:A 171 76 0.1412 0.1404 0.3158 5.03e-04 2i79:B, 2i79:C, 2i79:D, 2i79:E, 2i79:F
14 3dr8:A 173 80 0.1176 0.1156 0.2500 0.001 3dr8:B
15 5t7e:D 175 129 0.1706 0.1657 0.2248 0.001 5t7d:A, 5t7d:B, 5t7d:C, 5t7d:D, 5t7e:A, 5t7e:B, 5t7e:C
16 3fbu:A 166 142 0.1824 0.1867 0.2183 0.001
17 4qvt:D 146 82 0.1294 0.1507 0.2683 0.001 2pdo:H, 2pdo:B, 4qvt:A, 4qvt:B, 4qvt:C, 4qvt:E, 4qvt:F, 4qvt:G, 4qvt:H
18 6z00:A 156 65 0.1294 0.1410 0.3385 0.002 6yzz:A, 6z00:B
19 4jxr:B 185 78 0.1235 0.1135 0.2692 0.003
20 7l1k:A 149 127 0.2059 0.2349 0.2756 0.003
21 7kyj:B 194 144 0.1824 0.1598 0.2153 0.003 6edd:A, 6edd:B, 6edv:A, 7kpp:A, 7kpp:B, 7kps:A, 7kps:B, 7kye:A, 7kyj:A
22 1i1d:D 161 151 0.2118 0.2236 0.2384 0.009 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
23 6wqc:A 293 53 0.1059 0.0614 0.3396 0.010 6wqb:A
24 2cnm:A 151 57 0.1059 0.1192 0.3158 0.019 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
25 7wx5:A 288 59 0.1176 0.0694 0.3390 0.020 7wx6:A, 7wx7:A
26 7ovu:A 196 65 0.1059 0.0918 0.2769 0.022
27 8iyo:D 163 84 0.1765 0.1840 0.3571 0.026 8iyo:A, 8iyo:B, 8iyo:C
28 5c88:A 158 54 0.1118 0.1203 0.3519 0.038 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
29 3r95:A 180 94 0.1294 0.1222 0.2340 0.059 3r95:B, 3r96:A, 3r96:B, 3r9e:A, 3r9e:B, 3r9f:A, 3r9f:B, 3r9g:A, 3r9g:B
30 1wwz:A 157 109 0.1647 0.1783 0.2569 0.059 1wwz:B
31 5wje:A 159 38 0.0706 0.0755 0.3158 0.065 5wjd:A
32 5dwn:A 181 81 0.1412 0.1326 0.2963 0.068 5dwn:B, 5dwn:C, 5dwn:D
33 3zj0:A 202 72 0.1294 0.1089 0.3056 0.10
34 2bue:A 179 183 0.1941 0.1844 0.1803 0.14 2prb:A, 2qir:A, 1v0c:A, 2vqy:A
35 7mx2:A 152 124 0.1471 0.1645 0.2016 0.14 7rb3:A
36 4ri1:B 179 79 0.1353 0.1285 0.2911 0.23 4ri1:A, 4ri1:C
37 3exn:A 154 68 0.1000 0.1104 0.2500 0.28
38 6ygb:A 159 48 0.1000 0.1069 0.3542 0.46 6ygc:A, 6ygd:A
39 5nnp:B 179 51 0.1059 0.1006 0.3529 0.59 5nnp:F
40 6bvc:A 154 58 0.1059 0.1169 0.3103 0.90 1bo4:A, 1bo4:B
41 8wko:A 425 57 0.1059 0.0424 0.3158 1.2 8wko:B, 8wkr:A, 8wkr:B, 8wkr:C, 8wkr:D
42 7oju:A 214 60 0.1176 0.0935 0.3333 1.3
43 8i0v:4 161 32 0.0706 0.0745 0.3750 1.3
44 3pp9:A 176 102 0.1471 0.1420 0.2451 1.6 3pp9:B, 3pp9:C
45 2jlm:F 180 77 0.0941 0.0889 0.2078 1.7
46 2ob0:C 166 43 0.0765 0.0783 0.3023 3.2 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
47 4zm6:A 844 57 0.0765 0.0154 0.2281 3.4 4zm6:B
48 4qc6:A 179 83 0.1176 0.1117 0.2410 4.9 4qc6:B
49 1s7n:B 179 165 0.1706 0.1620 0.1758 5.0 1s7l:A, 1s7n:A, 1s7n:C, 1s7n:D
50 2qfc:A 284 99 0.1529 0.0915 0.2626 5.3 2qfc:B, 3u3w:A, 3u3w:B
51 1xv5:A 401 38 0.0765 0.0324 0.3421 6.2 1y6f:A, 1y6f:B, 1y6g:A, 1y6g:B, 1y8z:A
52 5naq:A 461 132 0.2176 0.0803 0.2803 6.2 5naq:B, 5naq:C, 5naq:D, 5naq:E, 5naq:F
53 6c95:B 160 102 0.1176 0.1250 0.1961 6.6 6ppl:C, 6pw9:C
54 2ozg:A 388 55 0.0941 0.0412 0.2909 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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