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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDP
QQALKELAKMCILADCTLILAWSPEEAGRYLETYKA

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sxb:G 191 115 0.9914 0.6021 1.0000 1.46e-83 2jnw:A
2 3ai2:A 263 29 0.1121 0.0494 0.4483 0.85 3ai2:B, 3ai2:H, 3ai2:D, 3ai2:E, 3ai2:C, 3ai2:F, 3ai2:G, 3ai3:A, 3ai3:C, 3ai3:E, 3ai3:G
3 1j04:A 387 51 0.1552 0.0465 0.3529 1.2 4cbr:A, 4cbs:A, 5f9s:A, 5f9s:B, 1h0c:A, 5hhy:A, 5hhy:B, 5luc:A, 5luc:B, 5luc:E, 5luc:G, 5luc:M, 5luc:N, 5luc:S, 5luc:T, 5ofy:A, 5og0:A, 6rv0:A, 6rv1:A, 2yob:A, 2yob:B
4 8dzr:A 258 70 0.1466 0.0659 0.2429 1.6
5 5xte:J 378 54 0.1207 0.0370 0.2593 2.3 5xte:V, 5xth:AJ, 5xth:AV, 5xti:AJ, 5xti:AV
6 4djh:B 448 70 0.1466 0.0379 0.2429 4.2 4djh:A
7 8eup:x 306 40 0.1207 0.0458 0.3500 4.4 8esq:x, 8eth:x, 8eti:x, 8euy:x, 8ev3:x
8 4g3h:C 310 49 0.1207 0.0452 0.2857 5.3 4g3h:A, 4g3h:B, 4g3h:D
9 4qdk:A 219 85 0.1897 0.1005 0.2588 7.2 4qdj:A, 4qdk:B
10 1w6j:A 727 47 0.1293 0.0206 0.3191 7.3 1w6k:A
11 2nx9:B 453 62 0.1724 0.0442 0.3226 7.4 2nx9:A
12 3s3s:A 620 11 0.0603 0.0113 0.6364 8.1 3s3p:A
13 2q3z:A 655 11 0.0603 0.0107 0.6364 8.2 9bc2:A, 3s3j:A
14 4pyg:A 685 11 0.0603 0.0102 0.6364 8.3 6a8p:A, 6a8p:B, 6a8p:C, 9bc3:A, 9bc3:B, 9bc4:A, 1kv3:A, 1kv3:B, 1kv3:C, 1kv3:D, 1kv3:E, 1kv3:F, 6kzb:A, 6kzb:B, 3ly6:A, 3ly6:B, 3ly6:C, 4pyg:B, 4pyg:E, 8tr9:A
15 6kzb:C 649 11 0.0603 0.0108 0.6364 8.6
16 1gm5:A 729 69 0.1724 0.0274 0.2899 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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