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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPR
RKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWMP

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8yzs:A 133 129 1.0000 0.9699 1.0000 7.92e-97 8yzs:B
2 4ix7:A 114 81 0.1705 0.1930 0.2716 0.25 4ix7:B
3 6s20:C 480 20 0.0930 0.0250 0.6000 1.1
4 1y56:B 374 39 0.1008 0.0348 0.3333 1.1
5 8hki:q 338 39 0.0930 0.0355 0.3077 5.0
6 5o6c:A 252 72 0.1395 0.0714 0.2500 5.1 6t7f:A
7 4i3x:A 476 31 0.1008 0.0273 0.4194 7.1 4i3t:A, 4i3t:B, 4i3t:C, 4i3t:D, 4i3t:E, 4i3t:F, 4i3t:G, 4i3t:H, 4i3u:A, 4i3u:B, 4i3u:C, 4i3u:D, 4i3u:E, 4i3u:F, 4i3u:G, 4i3u:H, 4i3v:A, 4i3v:B, 4i3v:C, 4i3v:D, 4i3v:E, 4i3v:F, 4i3v:G, 4i3v:H, 4i3w:A, 4i3w:B, 4i3w:C, 4i3w:D, 4i3w:E, 4i3w:F, 4i3w:G, 4i3w:H, 4i3x:B, 4i3x:C, 4i3x:D, 4i3x:E, 4i3x:F, 4i3x:G, 4i3x:H
8 4cyd:B 225 23 0.0620 0.0356 0.3478 7.1 4cyd:A, 4cyd:C, 4cyd:D, 3r6s:A, 3r6s:B, 3r6s:C, 3r6s:D, 3r6s:E, 3r6s:F
9 1esm:A 311 78 0.1550 0.0643 0.2564 9.1 1esm:B, 1esm:C, 1esm:D, 1esn:A, 1esn:B, 1esn:C, 1esn:D, 4f7w:A, 4f7w:C, 4f7w:B, 4f7w:D, 4f7w:E, 4f7w:F, 4f7w:G, 4f7w:H, 4gi7:A, 4gi7:C, 4gi7:B, 4gi7:D, 4gi7:E, 4gi7:F, 4gi7:G, 4gi7:H, 4ne2:A, 4ne2:B, 1sq5:A, 1sq5:B, 1sq5:C, 1sq5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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