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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLKPVATGNQDLKDGGFAFPPTN
PLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNPDNDKSNYKYPAVYDYNDKKCHILYIAAQENNGPRYCNSMFC
FRPAKDKLFENYTYLSKNVVDNWEEVCPRKNLENAKFGLWVDGNCEDIPHVNEFSANDLFECNKLVFELSASDQPKQYYE
KIKEGFKNKNASMIKSAFLPTGADRYKSHGKGYNWGNYNRETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6n87:A 314 314 1.0000 1.0000 1.0000 0.0
2 3srj:A 298 315 0.8408 0.8859 0.8381 0.0 3sri:A, 3srj:B, 4z09:A, 4z0d:A, 4z0e:A, 4z0f:A
3 6n7q:A 266 314 0.8439 0.9962 0.8439 0.0
4 4apm:A 339 311 0.3471 0.3215 0.3505 1.22e-50
5 4yiv:A 374 339 0.3089 0.2594 0.2861 4.95e-32
6 6nzu:A 402 119 0.0987 0.0771 0.2605 0.025 6nzu:E, 8pk8:A, 8pk9:A, 8pka:A, 7rtk:A, 8tvt:A, 6uxe:A, 6w1d:A, 6wi2:A, 6wih:A, 5wkp:A, 5wkp:E, 5wlw:A, 5wlw:E
7 5wgb:A 291 113 0.0987 0.1065 0.2743 0.027
8 4l63:A 249 107 0.0892 0.1124 0.2617 1.5 4l6t:A
9 3cei:A 213 18 0.0350 0.0516 0.6111 1.7 3cei:B
10 5ldr:A 731 58 0.0446 0.0192 0.2414 3.5 5ldr:B
11 7bvs:A 290 37 0.0318 0.0345 0.2703 8.7 7exb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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