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BioLiP
>protein
NPNQELGVVQCLCRRIAPLTQPPFGVRCRATLNCPCDYIGDCPGPAEQYMYRCPNCGPRSHVACSGVHQGTCQQVHP

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vjj:A 77 77 1.0000 1.0000 1.0000 2.71e-52 5vjj:B
2 3kv6:D 448 54 0.2208 0.0379 0.3148 0.49 3kv5:D, 3kv5:A, 3kv6:A, 3kv9:A, 3kva:A, 3u78:A
3 3kv4:A 432 53 0.2338 0.0417 0.3396 1.0 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A
4 6knb:B 1120 34 0.1558 0.0107 0.3529 1.7 6knc:B
5 6knb:B 1120 56 0.2338 0.0161 0.3214 8.4 6knc:B
6 3mzs:A 470 35 0.1688 0.0277 0.3714 4.4 3mzs:B, 3mzs:C, 3mzs:D
7 6rxt:UB 512 27 0.1299 0.0195 0.3704 4.4 5oql:B, 6rxu:UB, 6rxv:UB, 6rxx:UB, 6rxy:UB, 6rxz:UB
8 5ue8:A 847 31 0.1558 0.0142 0.3871 4.5 5ue8:B, 1y8f:A
9 4kcf:A 407 63 0.2468 0.0467 0.3016 5.5 3m9v:A
10 3kb1:A 243 16 0.0909 0.0288 0.4375 7.9 3kb1:B, 6oby:A, 6oby:B
11 6h25:J 868 31 0.1299 0.0115 0.3226 9.9 6d6q:K, 6d6r:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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