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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NLYFQGMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTF
ERTGAHIMGKRMFEGGERGWPEEAPFHTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREAAGERDIRISGGANV
IQQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRIDRVLASPTATHLRYVRL

The query sequence (length=218) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kgy:A 218 218 1.0000 1.0000 1.0000 1.24e-163 3kgy:B
2 7xh4:A 177 128 0.1468 0.1808 0.2500 3.26e-05 7xh2:A
3 8jsv:I 203 136 0.1651 0.1773 0.2647 9.96e-05 8jsv:A, 8jsv:B, 8jsv:C, 8jsv:D, 8jsv:E, 8jsv:F, 8jsv:G, 8jsv:H, 8jsv:J, 8jsy:A, 8jsy:B, 8jsy:C, 8jsy:D, 8jsy:E, 8jsy:F, 8jsy:G, 8jsy:H, 8jsy:I, 8jsy:J, 8jt0:A, 8jt0:B, 8jt0:C, 8jt0:D, 8jt0:E, 8jt0:F, 8jt0:G, 8jt0:H, 8jt0:I, 8jt0:J
4 2xw7:A 175 111 0.1468 0.1829 0.2883 3.83e-04 2xw7:B
5 1d1g:A 164 121 0.1468 0.1951 0.2645 0.001 1d1g:B
6 6de5:A 246 84 0.1055 0.0935 0.2738 0.20 4xrb:A, 4xt4:A, 4xt5:A, 4xt6:A, 4xt7:A, 4xt8:A
7 8hkx:AS2P 196 30 0.0550 0.0612 0.4000 2.0 8hky:AS2P, 8hkz:AS2P, 8hl1:AS2P, 8hl2:AS2P, 8hl3:AS2P, 8hl4:AS2P, 8hl5:AS2P, 8wkp:AS2P, 8wq2:AS2P, 8wq4:AS2P
8 7r81:c1 148 56 0.0734 0.1081 0.2857 3.0
9 6p8c:A 216 31 0.0550 0.0556 0.3871 3.0 6p8c:B
10 7l0o:A 479 42 0.0734 0.0334 0.3810 6.4 7l0o:B, 2woy:A, 2wqs:A, 2wza:A
11 3zpc:A 357 41 0.0596 0.0364 0.3171 6.5 3zpc:B, 3zpg:A
12 1g7s:A 576 37 0.0688 0.0260 0.4054 8.1 1g7t:A
13 8pv1:La 108 62 0.0780 0.1574 0.2742 8.2 8pv2:La, 8pv3:La, 8pv4:La, 8pv5:La, 8pv6:La, 8pv7:La, 8pv8:La, 8pvk:La, 8pvl:La

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218