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BioLiP
>protein
NLLKKFSIRLRVLNGLLYKSLTELLCTPQVSQEVYDLNVELSKVSVTSDFSACRVYWKTGVSAEQNKHTESVLQRSAAYM
RHLLISQQTLRNVPPIVFVQDKRDLVLAEVDRLLAEADFGPPHRDASPRSFLLG

The query sequence (length=134) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pnu:a 143 141 1.0000 0.9371 0.9504 1.02e-94 7pnt:a
2 7pnv:a 191 155 0.9627 0.6754 0.8323 8.93e-87
3 7po0:a 184 127 0.7090 0.5163 0.7480 1.09e-64
4 7pny:a 211 128 0.7090 0.4502 0.7422 3.15e-64 8csr:6, 8css:6, 8cst:6, 8csu:6, 7pnx:a, 7pnz:a
5 7obq:v 201 40 0.0746 0.0498 0.2500 1.5 2fh5:B, 6frk:v, 7nfx:v
6 2ze0:A 531 29 0.0896 0.0226 0.4138 3.9
7 5uxm:A 445 52 0.1418 0.0427 0.3654 4.0 5uxn:A, 5uxo:A
8 1keq:A 238 34 0.0896 0.0504 0.3529 9.9 1dmx:A, 1dmx:B, 1dmy:A, 1dmy:B, 1keq:B, 1urt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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