Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NLKVEFYNSNPSDTTNSINPQFKVTNTGSSAIDLSKLTLRYYYTVDGQKDQTFWCDHAAIIGSNGSYNGITSNVKGTFVK
MSSSTNNADTYLEISFTGGTLEPGAHVQIQGRFAKNDWSNYTQSNDYSFKSASQFVEWDQVTAYLNGVLVWG

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jo5:A 170 152 1.0000 0.8941 1.0000 3.57e-111 4b9f:A, 4b9f:B, 1nbc:A, 1nbc:B
2 3zqw:A 153 155 0.5395 0.5359 0.5290 1.91e-50 3zu8:A, 3zuc:A
3 1g43:A 160 154 0.4671 0.4437 0.4610 1.19e-43
4 4b97:A 151 154 0.4539 0.4570 0.4481 1.48e-39
5 6d5b:B 154 155 0.5000 0.4935 0.4903 3.25e-39 6d5b:A, 6d5b:C, 6d5b:D, 6d5b:E, 6d5b:F, 6d5b:G, 6d5b:H, 6d5b:I, 6d5b:J, 6d5b:K, 6d5b:L
6 6sl4:A 150 154 0.4276 0.4333 0.4221 5.99e-39 6sl4:B, 6sl4:C
7 4b9c:A 150 151 0.3553 0.3600 0.3576 2.92e-29
8 4b9p:A 166 166 0.3947 0.3614 0.3614 1.93e-28
9 4b96:A 151 152 0.3355 0.3377 0.3355 1.31e-19
10 2wo4:A 159 148 0.3355 0.3208 0.3446 1.43e-18 2wnx:A, 2wob:A, 2wob:C, 2wob:E
11 3zqx:A 146 154 0.3289 0.3425 0.3247 1.39e-15
12 3ff1:B 444 64 0.1250 0.0428 0.2969 2.8
13 5yu6:C 1073 49 0.0855 0.0121 0.2653 6.1 3a6p:A, 3a6p:F, 5yu6:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218