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BioLiP
>protein
NKLYKNIEIDTDTHSVYIHSILLNLTLTEYKIISFMIDQPHKVFTRGELMNHCMSDALERTVDSHVSKLRKKLEEQGIFQ
MLINVRGVGYRLDNP

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5x5l:E 98 98 0.9789 0.9490 0.9490 9.71e-62 5x5l:B, 5x5l:H, 5x5l:A
2 2z33:A 104 93 0.3368 0.3077 0.3441 1.58e-15 1gxp:A, 1gxp:B, 1gxp:E, 1gxp:F
3 7e1b:A 209 90 0.3684 0.1675 0.3889 3.04e-13 7e1b:B, 7e1b:C, 7e1b:H, 7e1b:D, 7e1b:E, 7e1b:F, 7e1b:G, 7e1h:A, 7e1h:B, 7e1h:E
4 4b09:A 218 89 0.3474 0.1514 0.3708 9.05e-12 4b09:B, 4b09:C, 4b09:D, 4b09:E, 4b09:F, 4b09:G, 4b09:I, 4b09:K
5 8hig:A 98 90 0.2947 0.2857 0.3111 3.46e-11 8hig:B, 8hml:A, 8hml:B
6 2oqr:A 226 91 0.2737 0.1150 0.2857 8.28e-09
7 2gwr:A 225 92 0.3158 0.1333 0.3261 9.87e-09 3nhz:B, 3nhz:C, 3nhz:D
8 8hih:O 217 91 0.3158 0.1382 0.3297 5.92e-08 8hih:P, 8hih:N, 8hih:Q
9 5ed4:E 224 95 0.2842 0.1205 0.2842 9.21e-08 5ed4:A, 5ed4:B, 5ed4:F, 2pmu:E
10 6lxn:A 110 91 0.2421 0.2091 0.2527 1.88e-06 6lxn:B
11 1ys6:B 227 89 0.2526 0.1057 0.2697 1.39e-05 1ys6:A, 1ys7:A, 1ys7:B
12 6cqg:A 98 93 0.2842 0.2755 0.2903 0.004
13 4nhj:A 102 91 0.2211 0.2059 0.2308 0.18 4nhj:B
14 2mow:A 161 44 0.1474 0.0870 0.3182 0.69 6gc3:A, 2lo6:A, 6o3w:A, 6o3w:B, 6o3x:A, 6o3x:B, 6o3x:C, 6o3y:A, 6o3y:B, 6o3y:C
15 8ih7:A 340 43 0.1368 0.0382 0.3023 0.77 8ih7:C
16 7x7q:A 185 30 0.1053 0.0541 0.3333 5.6 7x5a:A, 7x5a:C, 7x5a:F, 7x5a:B, 7x5a:G, 7x5a:D, 7x7q:C, 7x7q:F, 7x7q:D, 7x7q:E, 7x7q:H, 7x7q:B
17 8tlq:A 1283 90 0.2737 0.0203 0.2889 7.8 8tlt:A, 6v93:A
18 5afq:B 444 64 0.1579 0.0338 0.2344 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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