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BioLiP
>protein
NILDYLSTERDHVMMAVQYYMSKQRLDDLYRQLPTKTRSYIDIINMYCDKVNNDYNRDMNIMYDMASTESFTVYDINNEV
NTILMDNKGLGVRLATISFITELGKRCMNPVETIKMFTLLSHTICDDCFIDYITDIS

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ajk:A 148 137 1.0000 0.9257 1.0000 1.83e-98 5ajj:A, 5ajk:C, 5ajk:E, 5ajk:G, 5ajk:I, 5ajk:K, 4d2l:A, 4d2m:A, 4d2m:C
2 4uf2:A 136 109 0.2190 0.2206 0.2752 7.94e-05 4uf1:A, 4uf3:A
3 6eg2:A 619 48 0.1460 0.0323 0.4167 0.23 6eg3:A
4 7vdv:A 809 48 0.1460 0.0247 0.4167 0.26 7vdt:A
5 7y8r:I 732 48 0.1460 0.0273 0.4167 0.37
6 5hzr:A 552 27 0.1095 0.0272 0.5556 0.52
7 6vz4:K 616 108 0.2117 0.0471 0.2685 0.80 6kw3:Y, 6kw4:Y, 6kw5:Q
8 6tda:S 783 27 0.1022 0.0179 0.5185 1.3
9 6uxw:A 778 86 0.1825 0.0321 0.2907 1.3 7egp:A, 6iy2:O, 6iy3:O, 6uxv:A, 5x0x:O, 5x0y:O, 5z3l:O, 5z3o:O, 5z3u:O, 5z3v:O
10 2jby:A 127 67 0.1241 0.1339 0.2537 1.7
11 6gej:M 688 28 0.0949 0.0189 0.4643 3.8 6gen:M
12 6nej:B 346 54 0.1168 0.0462 0.2963 4.6 6neg:A, 6neg:B, 6neh:A, 6neh:B, 6nej:A
13 4u60:C 274 82 0.1606 0.0803 0.2683 4.8 6hku:B, 6hku:C, 6hku:F, 6hku:I, 6hku:J, 6hku:D, 6hkv:A, 6hkv:B, 6hkv:C, 6hkv:D, 6hkv:E, 6hkv:F, 6hkv:G, 6hkv:H, 6hkv:I, 6hkv:J, 4u60:A, 4u60:D, 4u60:E, 4u60:B, 4u61:A, 4u61:B, 4u61:C, 4u61:E, 4u61:H, 4u61:I, 4u61:J, 4u62:B, 4u62:C, 4u62:J
14 7aer:B 133 48 0.1168 0.1203 0.3333 5.0 7aer:C, 7bxo:H, 6m6v:B, 6m6v:C, 6m6v:D
15 7emf:0 267 40 0.0949 0.0487 0.3250 5.7 7enj:0, 8gxq:c, 8gxs:c, 7nvr:p
16 8ki6:A 1580 63 0.1095 0.0095 0.2381 7.5
17 8ki8:A 1621 63 0.1095 0.0093 0.2381 7.9
18 3was:A 389 29 0.0876 0.0308 0.4138 8.7 4kmi:A, 4kmi:B, 3was:B, 3wat:A, 3wat:B, 3wau:A, 3wau:B
19 8ki7:A 2003 63 0.1095 0.0075 0.2381 9.2
20 6ne3:W 461 23 0.0876 0.0260 0.5217 9.7 8v4y:W, 8v6v:W, 8v6v:X, 8v7l:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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