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BioLiP
>protein
NGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVN
GRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEP
IEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSW
VKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ab7:H 422 272 0.9347 0.6445 1.0000 0.0 4ab7:D, 3zzf:A, 3zzf:B, 3zzf:C, 3zzf:D, 3zzh:A, 3zzh:B, 3zzh:C, 3zzh:D
2 3s6h:A 436 284 0.4296 0.2867 0.4401 7.39e-82 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
3 2v5h:B 289 265 0.3024 0.3045 0.3321 2.54e-29 2jj4:A, 2jj4:B, 2v5h:A, 2v5h:C, 2v5h:D, 2v5h:E, 2v5h:F
4 3l86:A 245 201 0.2234 0.2653 0.3234 7.73e-20
5 2bty:A 282 285 0.2852 0.2943 0.2912 5.76e-19 2bty:B, 2bty:C
6 2buf:C 298 285 0.2646 0.2584 0.2702 1.91e-18 2buf:A, 2buf:B, 2buf:D, 2buf:E, 2buf:F, 2buf:G, 2buf:H, 2buf:I, 2buf:J, 2buf:L
7 2rd5:B 283 257 0.2543 0.2615 0.2879 7.65e-17 2rd5:A, 4usj:A, 4usj:B
8 2ap9:A 299 268 0.2543 0.2475 0.2761 1.27e-15 7nln:A, 7nln:B, 7nlo:A, 7nlp:A, 7nlr:A, 7nlt:A, 7nlw:A, 7nlx:A, 7nly:A, 7nlz:A, 7nm0:A, 7nn8:A, 7nnb:A
9 2buf:K 273 270 0.2543 0.2711 0.2741 1.28e-14
10 3b8g:A 424 247 0.2165 0.1486 0.2551 4.35e-08 3d2m:A, 3d2p:A, 3d2p:B, 4i49:A, 2r8v:A, 2r98:A
11 3wwm:A 269 196 0.1821 0.1970 0.2704 5.99e-07
12 3t7b:B 258 255 0.1993 0.2248 0.2275 5.35e-04 3t7b:A
13 1gs5:A 258 258 0.2027 0.2287 0.2287 0.001 1gsj:A, 1oh9:A, 1oha:A, 1ohb:A, 2x2w:A, 2x2w:B
14 6wq6:A 547 55 0.0584 0.0311 0.3091 0.26 6wqi:A, 6wqi:B, 6wqs:A, 6wqt:A
15 4wqs:D 1151 46 0.0653 0.0165 0.4130 0.31
16 2o5j:D 1264 46 0.0653 0.0150 0.4130 0.37 2o5j:N
17 4wqs:N 1288 46 0.0653 0.0148 0.4130 0.38
18 3aoh:I 1289 46 0.0653 0.0147 0.4130 0.38 3aoi:I
19 2a68:D 1392 46 0.0653 0.0136 0.4130 0.39 2a68:N, 2a69:D, 2a69:N, 2a6e:D, 2a6e:N, 2a6h:D, 2a6h:N, 2be5:D, 2be5:N, 2cw0:D, 2cw0:N, 1iw7:D, 1iw7:N, 1smy:D, 1smy:N, 1zyr:D, 1zyr:N
20 3eql:D 1321 46 0.0653 0.0144 0.4130 0.40 3eql:N, 8hsg:J, 8hsh:J, 8hsl:J, 8hsr:J, 6m6a:D, 6m6b:D, 6m6c:D, 2o5i:D, 2o5i:N, 2ppb:D, 2ppb:N
21 3dxj:D 1504 46 0.0653 0.0126 0.4130 0.40 6cuu:D, 5d4c:D, 5d4c:N, 5d4d:D, 5d4d:N, 5d4e:D, 5d4e:N, 3dxj:N, 5e17:D, 5e18:D, 7eh0:D, 7eh1:D, 7eh2:D, 7eh2:N, 4g7h:D, 4g7h:N, 4g7o:D, 4g7o:N, 4g7z:D, 4g7z:N, 6kqd:D, 6kqd:N, 6kqe:D, 6kqf:D, 6kqg:D, 6kqh:D, 6kql:D, 6kqm:D, 6kqn:D, 6l74:D, 6lts:D, 7mlb:D, 7mli:D, 7mlj:D, 4oin:D, 4oio:D, 4oip:D, 4oiq:D, 4oir:D, 6ovr:D, 6ovy:D, 6ow3:D, 6oy5:D, 6oy6:D, 6oy7:D, 6p70:D, 6p71:D, 4q4z:D, 4q5s:D, 5tmc:D, 5tmf:D, 5vo8:D, 5voi:D, 8w8n:D, 8w8o:D, 8w8p:D, 3wod:D, 6wox:D, 6woy:D, 5x21:D, 5x22:N, 5xj0:D, 4xln:D, 4xlp:D, 4xlq:D, 4xlr:D, 4xls:D, 1ynj:D, 1ynn:D
22 5x22:D 1438 46 0.0653 0.0132 0.4130 0.43
23 6sa8:A 665 36 0.0584 0.0256 0.4722 0.94 7dne:B, 5mfg:C, 5mfg:D, 5mfg:B
24 6z7b:A 380 68 0.0756 0.0579 0.3235 1.4 6z7a:A, 6z7b:B, 6z7c:A, 6z7d:A, 6z7e:A
25 5goe:A 384 47 0.0584 0.0443 0.3617 1.5 5gns:A, 5gnt:A
26 4plr:A 289 36 0.0584 0.0588 0.4722 1.5 4plr:B, 4pls:A, 4pls:C, 4pls:D, 4pls:B, 4v3o:A, 4v3o:D, 4v3o:B, 4v3o:C, 4v3q:A, 4v3q:B, 4v3q:C, 4v3q:D
27 4plr:A 289 36 0.0584 0.0588 0.4722 1.5 4plr:B, 4pls:A, 4pls:C, 4pls:D, 4pls:B, 4v3o:A, 4v3o:D, 4v3o:B, 4v3o:C, 4v3q:A, 4v3q:B, 4v3q:C, 4v3q:D
28 4plr:A 289 36 0.0584 0.0588 0.4722 1.5 4plr:B, 4pls:A, 4pls:C, 4pls:D, 4pls:B, 4v3o:A, 4v3o:D, 4v3o:B, 4v3o:C, 4v3q:A, 4v3q:B, 4v3q:C, 4v3q:D
29 4plr:A 289 36 0.0584 0.0588 0.4722 1.5 4plr:B, 4pls:A, 4pls:C, 4pls:D, 4pls:B, 4v3o:A, 4v3o:D, 4v3o:B, 4v3o:C, 4v3q:A, 4v3q:B, 4v3q:C, 4v3q:D
30 5gom:A 407 47 0.0584 0.0418 0.3617 1.6 5gnr:A, 5gof:A, 5gom:B, 5yew:A, 5yew:B, 5yew:C
31 7uy7:E 783 42 0.0378 0.0140 0.2619 2.4
32 8u0k:A 247 233 0.1959 0.2308 0.2446 4.0 8u0k:B, 8u0l:A, 8u0l:B, 8u0m:A, 8u0m:B, 8u0n:A, 8u0n:B
33 7lnu:A 239 185 0.1409 0.1715 0.2216 4.3 7lnt:A, 7lnx:A
34 7ohr:I 409 127 0.1100 0.0782 0.2520 4.4
35 2x6b:A 287 36 0.0412 0.0418 0.3333 4.6 7n9k:A, 7n9l:A, 6o9t:A, 6o9u:A, 6o9v:A, 6o9v:B, 2x6a:A, 2x6c:A
36 7lnu:B 261 185 0.1409 0.1571 0.2216 4.8 7lnt:B, 7lnw:A, 7lnw:B, 7lnx:B, 7n9d:A, 7n9d:B
37 6m5a:A 844 56 0.0619 0.0213 0.3214 9.3
38 8k17:B 362 93 0.0859 0.0691 0.2688 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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