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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NGEIISGFIAPHPPHLVYGENPPQNEPKSTGGWEQLRWAYERARASIEELKPDVLLVHSPHWITSVGHHFIGVDHLQGRS
VDPIFPNLFRFDYSINFDVELSEACCEEGRKAGLVTKMMRNPRFRPDYGTITTLHMIRPQWDIPVVSISANNTPYYLSME
EGLGEMDVLGKATREAILKSGKRAVLLASNTLSHWHFHEEPVPPEDMSKEHPQTKIGYEWDMRMIELMRQGRMEEVFQLL
PQFIEEAFAEVKSGAFTWMHAAMQYPNLPAELHGYGTVIGTGNAVVEWNLVKAGLARVA

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ihg:A 300 299 1.0000 0.9967 1.0000 0.0 8ihg:C
2 3vsh:D 304 296 0.7960 0.7829 0.8041 0.0 3vsh:B, 3vsi:B, 3vsi:D, 3vsj:B, 3vsj:D
3 7txy:F 293 286 0.5585 0.5700 0.5839 1.68e-122 7txy:B, 7txy:D, 7txy:H
4 8in2:A 263 114 0.1070 0.1217 0.2807 1.2 8in2:B
5 5hee:A 262 79 0.0736 0.0840 0.2785 2.6 5hee:B
6 8f4v:A 264 38 0.0401 0.0455 0.3158 3.5 8f4v:E, 8f4v:B, 8f4v:C, 8f4v:D
7 4rkk:A 317 93 0.0836 0.0789 0.2688 3.8 4rkk:C
8 7e7m:C 284 18 0.0301 0.0317 0.5000 6.6 7e7m:A, 7e7m:B, 7e7m:D
9 3fcr:A 458 33 0.0334 0.0218 0.3030 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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