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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NEKYVVTWDMLQIHARKLAQRLLPAEQWKGIIAVSRGGLVPAGILARELGIRYVDTVCISSYDHDNQRDLKVLKRAEGDG
EGFIVIDDLVDTGGTATAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQNTWIEQPWDMAVTFVAPLSG

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xtk:A 150 150 1.0000 1.0000 1.0000 7.40e-110
2 1a95:B 150 149 0.8933 0.8933 0.8993 9.94e-100 1a95:C, 1a96:B, 1a96:C, 1a97:B, 1a97:C, 4jit:B, 4jit:C
3 4jls:B 135 149 0.8000 0.8889 0.8054 4.17e-84 4jls:A, 4jls:C, 4jls:D, 4jls:E, 4jls:H, 4jls:I, 4jls:J
4 4trb:B 209 148 0.2800 0.2010 0.2838 1.88e-10 4trc:A, 4trc:B, 4ts5:A, 4ts5:B, 4ts7:A, 4ts7:B
5 5knx:B 176 114 0.2067 0.1761 0.2719 6.70e-06 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
6 4zfn:B 177 151 0.2867 0.2429 0.2848 1.81e-05 5bqp:A, 5bqp:B, 5bqp:C, 5bqp:D, 4z1o:A, 4z1o:B, 4zfn:A
7 3kb8:A 201 130 0.2600 0.1940 0.3000 4.01e-05 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
8 1p17:B 204 156 0.2667 0.1961 0.2564 1.15e-04 1i0i:A, 1i0i:B, 1i0l:A, 1i0l:B, 1i13:A, 1i13:B, 1i14:A, 1i14:B, 1p17:A, 1p17:C, 1p17:D, 1p18:A, 1p18:B, 1p19:A, 1p19:B, 1p19:C, 1p19:D, 1tc1:A, 1tc1:B, 1tc2:A, 1tc2:B
9 4qyi:B 171 129 0.2400 0.2105 0.2791 6.72e-04 4qyi:A, 4qyi:C, 4qyi:D, 4qyi:E
10 1l1q:A 181 87 0.1600 0.1326 0.2759 0.006 1l1r:A
11 7kl6:A 147 119 0.1800 0.1837 0.2269 0.008
12 1dqn:A 230 108 0.1933 0.1261 0.2685 0.060 1dqn:B, 1dqp:A, 1dqp:B
13 5vog:A 176 162 0.2733 0.2330 0.2531 0.24
14 6fci:A 179 44 0.1067 0.0894 0.3636 0.81 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
15 5esw:A 190 73 0.1867 0.1474 0.3836 1.0 5esx:A, 5esx:B
16 3dah:C 300 114 0.2000 0.1000 0.2632 1.1 3dah:A, 3dah:B
17 3cin:A 382 52 0.1133 0.0445 0.3269 2.1
18 8fx3:B 223 120 0.2067 0.1390 0.2583 2.2 8fwy:A, 8fwy:B, 8fwz:A, 8fwz:B, 8fx0:A, 8fx0:B, 8fx1:A, 8fx1:B, 8fx2:A, 8fx2:B, 8fx3:A
19 7rmw:A 270 90 0.1467 0.0815 0.2444 2.4 1p4a:A, 1p4a:B, 1p4a:C, 1p4a:D, 7rmw:B, 7rmw:C, 7rmw:F
20 1tyo:A 427 37 0.0867 0.0304 0.3514 3.6 1xkd:A, 1xkd:B
21 5nd5:A 669 55 0.1200 0.0269 0.3273 5.0 5nd5:B
22 4paw:A 197 64 0.1333 0.1015 0.3125 5.5 4paw:B
23 6igs:B 167 143 0.2467 0.2216 0.2587 5.7 6igs:A, 6igs:C, 6igs:D
24 6asv:C 311 70 0.1267 0.0611 0.2714 6.4 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
25 4di8:A 294 53 0.1067 0.0544 0.3019 7.1 4di8:B, 4di9:A
26 1jlx:A 299 59 0.1000 0.0502 0.2542 7.2 1jlx:B
27 6ojb:A 251 48 0.1067 0.0637 0.3333 7.6
28 6lbp:A 460 115 0.2000 0.0652 0.2609 7.9 6lbp:B
29 6gvk:A 201 27 0.0733 0.0547 0.4074 8.3 6gvl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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