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BioLiP
>protein
NDLCQECEDIVHLLTKMTKEDAFQEAIRKFLEQECDILPLKLLVPRCRQVLDVYLPLVIDYFQSQINPKAICNHVGLCPR

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6vzd:E 85 80 0.9750 0.9176 0.9750 2.82e-53 6vyn:A, 6vyn:E, 6vyn:C, 6vyn:B, 6vyn:D, 6vyn:F, 6vyn:G, 6vyn:H, 6vzd:A, 6vzd:C, 6vzd:B
2 5htk:A 425 71 0.2500 0.0471 0.2817 0.083 5hr5:A, 5htk:B
3 6jwz:B 565 53 0.2125 0.0301 0.3208 0.20 6jwr:A, 6jwr:B, 6jwv:A, 6jww:A, 6jww:B, 6jwx:A, 6jwy:A, 6kcl:A, 6kcm:A
4 6jwq:B 590 53 0.2125 0.0288 0.3208 0.21 6jwq:A, 6jws:A, 6jws:B, 6jwt:A, 6jwt:B, 6jwu:A, 6jwz:A, 6kck:A, 6kck:B, 6kcm:B
5 4kx7:A 875 50 0.1500 0.0137 0.2400 0.33 4kx8:A, 4kx9:A, 4kxa:A, 4kxb:A, 4kxc:A, 4kxd:A
6 4zdt:C 70 23 0.1125 0.1286 0.3913 0.94 4zdt:A
7 5z79:C 599 53 0.2250 0.0301 0.3396 1.8 5z79:A, 5z79:D, 5z79:E, 5z79:F
8 5z79:B 562 53 0.2250 0.0320 0.3396 2.1
9 6zwm:B 2185 43 0.1750 0.0064 0.3256 3.2 6zwm:A
10 3qta:A 207 75 0.2125 0.0821 0.2267 3.5 3qta:B
11 5hrm:B 495 36 0.1375 0.0222 0.3056 4.0 5hrm:A, 5hrm:C, 5hrm:D
12 6bcu:A 2204 43 0.1750 0.0064 0.3256 4.4 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B
13 3l2p:A 535 81 0.2500 0.0374 0.2469 5.8
14 4xm5:A 267 55 0.2000 0.0599 0.2909 6.9 4xlg:A
15 6hjw:B 245 40 0.1875 0.0612 0.3750 7.3 6hjw:A
16 7mop:A 2445 48 0.1625 0.0053 0.2708 7.3 6fyh:A, 6pfl:A, 6pfl:B, 8r7o:A, 8r7o:C, 8rd0:C, 8rd0:D, 8rd1:A, 8rd1:C, 8rd1:D, 8rd7:D, 6xz1:A
17 6go1:A 318 42 0.1750 0.0440 0.3333 9.2 6go1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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