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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIPE
DEEKNYWNYIKFKKNEFRKFFFMKKQQK

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7lma:H 199 108 1.0000 0.5427 1.0000 9.65e-77 6d6v:H, 4erd:A, 4erd:B, 7lmb:H, 7uy5:H, 7uy6:H
2 8gap:H 384 120 1.0000 0.2812 0.9000 9.61e-72
3 7dva:A 523 52 0.1389 0.0287 0.2885 1.1 7dva:B, 7dvb:A, 7dvb:B, 7dvb:C, 7dvb:D
4 6f4v:A 341 34 0.1204 0.0381 0.3824 1.5
5 3cux:A 501 24 0.1111 0.0240 0.5000 2.5
6 2axr:A 479 44 0.1111 0.0251 0.2727 4.5 3hsu:A, 1zr6:A
7 8jij:A 411 73 0.2037 0.0535 0.3014 5.3 8jik:A
8 6y88:B 265 82 0.1574 0.0642 0.2073 7.5 6y88:A, 6y88:C, 6y88:D, 6y88:E, 6y88:F, 6y88:G, 6y88:H
9 6skf:BE 255 36 0.1111 0.0471 0.3333 7.9 6skg:BE, 6th6:BE

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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