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BioLiP
>protein
NACHVPGDQIFLVSNSFTRRLLTRTDHCPKCDRLSTFRFMSVSGMVGRMPYKPVDTPGPSYATLYWRKQRSGKIASQPLN
EVCNK

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:BG 85 85 1.0000 1.0000 1.0000 1.53e-61 7am2:BG, 7ane:BG
2 7aoi:Bh 91 74 0.5882 0.5495 0.6757 1.52e-34 6hiv:Bh, 6hix:Bh, 6yxy:Bh
3 4s3q:A 682 51 0.1882 0.0235 0.3137 0.59 4s3r:A
4 6jtk:B 346 40 0.1882 0.0462 0.4000 0.71 6jtk:A, 6jtk:C, 6jtk:F, 6jtk:D, 6jtk:E
5 3w2z:A 178 32 0.1412 0.0674 0.3750 4.4 5zoh:A
6 6su2:A 498 56 0.2000 0.0341 0.3036 9.9 6su2:B, 6su2:C, 6su2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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