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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MWSHPQFEKASTGREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYC
GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYYMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKE
AGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPF
IPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIIPNWTPSPYRQLYQLYPGKI
SVFEKDTASIPSVMKMIELLGRKPGRDWGGRKRVFE

The query sequence (length=356) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7o1o:A 356 355 0.9944 0.9944 0.9972 0.0 3ciw:A, 3cix:A, 5fep:A, 5fes:A, 5few:A, 5fex:A, 5fez:A, 5ff0:A, 5ff2:A, 5ff3:A, 5ff4:A, 3iix:A, 3iiz:A, 4jxc:A, 4jy8:A, 4jy9:A, 4jyd:A, 4jye:A, 4jyf:A, 7o1p:A, 7o1s:A, 7o1t:A, 7o25:A, 7o26:A, 8qmk:A, 8qml:A, 8qmm:A, 8qmn:A
2 3t7v:A 337 330 0.2753 0.2908 0.2970 8.88e-37
3 4rtb:A 429 286 0.2360 0.1958 0.2937 8.15e-22
4 4wcx:A 454 294 0.2107 0.1652 0.2551 1.84e-17 4wcx:C
5 8vdw:B 332 278 0.2051 0.2199 0.2626 9.20e-14 8vdw:A
6 1r30:B 313 294 0.1910 0.2173 0.2313 4.07e-13 1r30:A
7 7pd1:B 367 151 0.1067 0.1035 0.2517 9.01e-10 7pd1:A, 7pd2:A, 7pd2:B
8 8vcw:A 327 273 0.1742 0.1896 0.2271 1.11e-09
9 1jqn:A 874 113 0.0843 0.0343 0.2655 0.94 1fiy:A, 1qb4:A
10 6htk:A 384 109 0.0758 0.0703 0.2477 1.3 6htk:B, 6htm:A, 6htm:B, 6hto:A, 6hto:B, 4r33:A, 4r33:B, 4r34:A, 4r34:B
11 5exk:A 306 183 0.1124 0.1307 0.2186 1.4 5exi:A, 5exj:A, 5exk:C, 5exk:E, 5exk:G, 5exk:I, 5exk:K
12 8k40:A 448 98 0.0674 0.0536 0.2449 1.5 8k40:B, 8k41:A
13 4ohf:B 458 37 0.0365 0.0284 0.3514 1.6 4ohf:A, 4ohf:C, 4ohf:D
14 1pqu:A 371 103 0.0787 0.0755 0.2718 2.1 1nx6:A, 1pqp:A, 1pqu:B, 1pqu:C, 1pqu:D, 1pr3:A, 1ta4:A, 1tb4:A
15 5s5a:E 123 48 0.0449 0.1301 0.3333 2.3
16 7n7i:A 279 99 0.0674 0.0860 0.2424 2.4 7n7i:B, 7n7i:C
17 4lrs:A 337 49 0.0337 0.0356 0.2449 3.9 4lrt:A, 4lrt:C
18 5ig9:A 319 27 0.0365 0.0408 0.4815 5.3 5ig9:H, 5ig9:B, 5ig9:C, 5ig9:D, 5ig9:E, 5ig9:F, 5ig9:G
19 5fl3:A 354 122 0.0927 0.0932 0.2705 7.1
20 5yvl:D 206 86 0.0590 0.1019 0.2442 8.4 6al6:A, 6al6:B, 6al7:A, 6al7:B, 6al7:D, 6al7:E, 6al8:A, 6al8:B, 6al8:D, 6al8:E, 5wpp:A, 5wpp:B, 5wpr:A, 5wps:A, 5wpu:A, 5yvl:A, 5yvl:B, 5yvl:C, 5z54:A, 5z54:B, 5z54:C, 5z54:D
21 8p66:B 54 9 0.0225 0.1481 0.8889 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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