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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE
GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL
GLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLR

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8apw:A 250 214 1.0000 0.8240 0.9626 2.53e-151 8apt:A, 8apu:A, 8apv:A, 3axz:A, 5d9f:A, 4mcb:A, 4mcb:B, 4mcc:A, 4mcc:B, 4mcd:A, 1uak:A, 1ual:A, 1uam:A, 4ypw:A, 4ypx:A, 4ypy:A, 4ypz:A, 4yq0:A, 4yq1:A, 4yq2:A, 4yq3:A, 4yq4:A, 4yq5:A, 4yq6:A, 4yq7:A, 4yq8:A, 4yq9:A, 4yqa:A, 4yqb:A, 4yqc:A, 4yqd:A, 4yqg:A, 4yqi:A, 4yqj:A, 4yqk:A, 4yql:A, 4yqn:A, 4yqo:A, 4yqp:A, 4yqq:A, 4yqr:A, 4yqs:A, 4yqt:A, 4yvg:A, 4yvh:A, 4yvi:A, 4yvi:B, 4yvj:A, 4yvj:B, 4yvk:A, 4yvk:B
2 1p9p:A 235 208 0.8592 0.7532 0.8510 2.29e-122
3 5wyr:B 248 220 0.6602 0.5484 0.6182 1.60e-100 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B
4 7mys:A 239 217 0.5534 0.4770 0.5253 6.13e-82 7mys:B
5 4h3z:B 256 223 0.5825 0.4688 0.5381 1.34e-80 4h3y:A, 4h3y:B, 4h3z:A
6 8b1n:B 410 213 0.4806 0.2415 0.4648 9.65e-60
7 8b1n:A 433 213 0.4806 0.2286 0.4648 1.79e-59 8byh:A, 8byh:B, 8ri0:A, 8ri0:B
8 4ig6:A 223 218 0.4223 0.3901 0.3991 6.50e-49
9 7kff:A 249 222 0.4272 0.3534 0.3964 5.62e-47
10 6qrb:A 220 214 0.4223 0.3955 0.4065 2.12e-46 6nw6:A, 6nw6:B, 6nw7:A, 6nw7:B, 6qo2:A, 6qo2:B, 6qo3:A, 6qo3:B, 6qo4:A, 6qo4:B, 6qo6:A, 6qo6:B, 6qoa:A, 6qoa:B, 6qoc:A, 6qoc:B, 6qod:A, 6qod:B, 6qoe:B, 6qof:A, 6qof:B, 6qog:A, 6qoh:A, 6qoh:B, 6qoi:A, 6qoi:B, 6qoj:A, 6qoj:B, 6qok:A, 6qok:B, 6qol:A, 6qol:B, 6qom:A, 6qon:A, 6qon:B, 6qoo:A, 6qoo:B, 6qop:A, 6qop:B, 6qoq:A, 6qoq:B, 6qor:A, 6qor:B, 6qos:A, 6qos:B, 6qot:A, 6qot:B, 6qou:A, 6qou:B, 6qov:A, 6qov:B, 6qow:A, 6qow:B, 6qox:B, 6qqq:A, 6qqq:B, 6qqr:B, 6qqs:A, 6qqt:A, 6qqt:B, 6qqu:A, 6qqu:B, 6qqv:A, 6qqv:B, 6qqw:A, 6qqx:A, 6qqx:B, 6qqy:A, 6qqy:B, 6qqz:A, 6qr0:A, 6qr1:A, 6qr2:A, 6qr3:A, 6qr3:B, 6qr4:A, 6qr4:B, 6qr5:A, 6qr6:A, 6qr6:B, 6qr7:A, 6qr7:B, 6qr8:A, 6qr8:B, 6qr9:A, 6qr9:B, 6qra:A, 6qra:B, 6qrb:B, 6qrc:A, 6qrc:B, 6qrd:A, 6qrd:B, 6qre:A, 6qre:B, 6qrf:A, 6qrg:A, 6qrg:B, 7rez:A, 7rez:B, 7rf0:A, 7rf0:B
11 6w15:A 202 205 0.4029 0.4109 0.4049 2.40e-45
12 5zhk:A 208 207 0.3883 0.3846 0.3865 6.63e-41 6jof:A, 5zhj:A, 5zhl:A
13 8fci:A 197 207 0.3932 0.4112 0.3913 3.56e-40 8fci:B
14 6qqs:B 204 207 0.3932 0.3971 0.3913 1.25e-38 6qqw:B, 6qqz:B, 6qr0:B, 6qr1:B, 6qr2:B, 6qr5:B, 6qrf:B
15 8ee7:A 456 39 0.0680 0.0307 0.3590 1.0 8ee4:A, 8ee4:B, 8ee4:C, 8ee4:D, 8ee4:E, 8ee4:F, 8ee7:B, 8eea:A, 8eea:B, 8eea:C, 8eea:D, 8eea:E, 8eea:F, 8sux:A, 8sux:B, 8sux:C, 8sux:D, 8sux:E, 8sux:F
16 3f3z:A 272 47 0.0922 0.0699 0.4043 3.7
17 6yuf:C 456 74 0.1165 0.0526 0.3243 4.0
18 7tm3:6 224 58 0.0825 0.0759 0.2931 4.6 7tut:6, 6w6l:4
19 6dc6:C 996 70 0.1019 0.0211 0.3000 5.5 6dc6:A, 1z7l:A, 1z7l:B, 1z7l:C
20 7pi0:S 243 53 0.0777 0.0658 0.3019 6.1 7pi0:s, 7pi5:S, 7pi5:s, 7pin:S, 7pin:s, 7pin:S1, 7pin:s1, 7piw:S, 7piw:s, 7piw:S1, 7piw:s1, 7pnk:S
21 8i0d:A 446 45 0.0680 0.0314 0.3111 6.3 8i0e:A
22 3b0h:A 536 50 0.0777 0.0299 0.3200 7.6 3b0h:B
23 7sva:A 792 36 0.0728 0.0189 0.4167 8.5 7swf:A, 7swq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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