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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKEDLAEYYEEAGIHPPEPIA
AAA

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4d4o:A 414 76 0.9036 0.1812 0.9868 8.05e-54 4d4o:C, 4d4p:A, 4d4p:C, 4d4p:G, 4d4p:H, 4x33:A, 4x33:B, 1yop:A, 1yws:A
2 2jr7:A 84 62 0.3735 0.3690 0.5000 9.73e-19
3 1wge:A 83 64 0.3735 0.3735 0.4844 1.48e-18
4 2l6l:A 155 54 0.1807 0.0968 0.2778 0.008
5 8xq7:A 1041 49 0.1807 0.0144 0.3061 0.23 8xq7:B
6 7k9s:A 211 66 0.2289 0.0900 0.2879 0.75 7k9s:B, 7k9s:C, 7k9s:D, 7k9s:E, 7k9s:F, 7k9u:A, 7k9u:B, 7k9v:A, 7k9v:B, 7k9w:A, 7k9w:B
7 1ek3:A 114 37 0.1566 0.1140 0.3514 1.4
8 1iyb:A 208 80 0.2530 0.1010 0.2625 1.6 1iyb:B
9 4cns:D 479 37 0.1566 0.0271 0.3514 3.1 4cns:A, 4cns:B, 4cns:C
10 7ciw:A 216 22 0.1687 0.0648 0.6364 3.2 7civ:A, 7cix:A
11 4b1m:A 165 10 0.1084 0.0545 0.9000 4.3 4b1l:A, 4b1m:B, 4b1m:C
12 6ras:I 433 27 0.1205 0.0231 0.3704 5.7 6rar:I, 6rau:I, 6rce:I
13 6msj:B 411 14 0.1084 0.0219 0.6429 6.7 8cvt:B, 5gjq:I, 5gjr:I, 5gjr:w, 5l4g:I, 5m32:d, 6msb:B, 6msd:B, 6mse:B, 6msk:B, 7qxn:B, 7qxp:B, 7qxu:B, 7qxw:B, 7qxx:B, 7qy7:B, 7qyb:B, 5t0c:AB, 5t0c:BB, 5t0g:B, 5t0h:B, 5t0i:B, 5vfp:B, 5vfq:B, 5vfr:B, 5vfs:B, 7w37:B, 7w38:B, 7w39:B, 7w3a:B, 7w3c:B, 7w3f:B, 7w3g:B, 7w3h:B, 7w3i:B, 7w3j:B, 7w3k:B, 6wjd:B, 6wjn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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