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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCS
FRRKGD

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jiw:Bb 86 86 1.0000 1.0000 1.0000 1.60e-60 8auv:K, 8b2l:K1, 8ip8:xa, 8ip9:xa, 8ipa:xa, 8ipb:xa, 8r6f:b, 4v3p:SX, 4v7e:Bb
2 4v6w:Ab 84 77 0.6744 0.6905 0.7532 5.97e-39 6xu6:Ab, 6xu7:Ab, 6xu8:Ab
3 7olc:Sb 81 78 0.6860 0.7284 0.7564 7.20e-39 7old:Sb, 8oo0:Sb, 7r81:c2, 6rxx:Cq, 7z3n:Sb, 7z3o:Sb
4 8c3a:d 81 77 0.6512 0.6914 0.7273 1.04e-36 8c3a:DO, 8cq7:d, 8cq7:DO, 8cqw:d, 8cqw:DO, 8cre:d, 8cre:DO, 8oeq:d, 8oeq:DO, 7pzy:c, 7q08:c, 7q0f:c, 7q0p:c, 7q0r:c, 8q5i:c
5 9bh5:Ab 82 78 0.6512 0.6829 0.7179 2.77e-36 9cai:Ab
6 5xxu:b 79 79 0.6279 0.6835 0.6835 5.08e-36
7 6fec:Y 84 77 0.7442 0.7619 0.8312 2.69e-35 7a01:L3, 7a09:R, 5a2q:b, 5aj0:Bb, 9bdl:AS27, 9bdn:AS27, 9bdp:AS27, 8bhf:c3, 9bkd:H, 9bln:H, 8btk:AA, 7cpu:Sb, 7cpv:Sb, 4d5l:b, 4d61:b, 6d90:cc, 6d9j:cc, 9f1b:AA, 9f1c:AA, 9f1d:AA, 5flx:b, 6g18:b, 6g4s:b, 6g4w:b, 6g51:b, 6g53:b, 6g5h:b, 6g5i:b, 8g5y:Sb, 8g5z:Sb, 8g60:Sb, 8g61:Sb, 8g6j:Sb, 8glp:Sb, 6gz3:Bb, 6gz4:Bb, 6gz5:Bb, 6hcf:c1, 6hcj:c2, 6hcm:c1, 6hcq:c2, 8ifd:3P, 8ife:3P, 6ip5:3P, 6ip6:3P, 6ip8:3P, 3j7p:Sb, 3j7r:Sb, 3jag:bb, 3jah:bb, 3jai:bb, 3jaj:Sb, 3jan:Sb, 8jdj:AN, 8jdk:AN, 8jdl:AN, 8jdm:AN, 7jqb:e, 7jqc:e, 5k0y:Y, 8k2c:Sb, 7k5i:b, 4kzx:b, 4kzy:b, 4kzz:b, 5lks:Sb, 7ls1:S3, 7ls2:S3, 5lzs:bb, 5lzt:bb, 5lzu:bb, 5lzv:bb, 5lzw:bb, 5lzx:bb, 5lzy:bb, 5lzz:bb, 7mdz:bb, 7mq8:NQ, 7mq9:NQ, 7mqa:NQ, 6mtb:bb, 6mtc:bb, 6mtd:bb, 6mte:bb, 7nwg:c2, 7nwh:bb, 7nwi:bb, 7o7y:AA, 7o7z:AA, 7o80:AA, 7o81:AA, 5oa3:b, 6ole:Sb, 6olf:Sb, 6olg:Bb, 6oli:Sb, 6olz:Bb, 6om0:Sb, 6om7:Sb, 7oya:b2, 7oyb:b2, 7oyc:b2, 7oyd:Bb, 8oz0:M, 8p03:c, 8p09:c, 8p2k:AA, 6p4g:c, 6p4h:c, 6p5i:c, 6p5j:c, 6p5k:c, 6p5n:c, 8pj1:H, 8pj2:H, 8pj3:H, 8pj4:H, 8pj5:H, 8pj6:H, 8ppk:b, 8ppl:Ab, 8q7z:AA, 8q87:AA, 7qgg:Sb, 8qoi:Sb, 7qp6:H, 7qp7:H, 7qvp:Sb, 7qvp:Rb, 6qzp:Sb, 7r4x:b, 6r5q:JJ, 6r6g:JJ, 6r6p:JJ, 6r7q:JJ, 8rg0:H, 8scb:bb, 6sgc:c1, 7syg:c, 7syh:c, 7syi:c, 7syj:c, 7syk:c, 7syl:c, 7sym:c, 7syn:c, 7syo:c, 7syp:c, 7syq:c, 7syr:c, 7sys:c, 7syt:c, 7syu:c, 7syv:c, 7syw:c, 7syx:c, 5t2c:AV, 8t4s:b, 7toq:AS27, 7tor:AS27, 7tql:b, 7ucj:Bb, 7uck:Bb, 4ug0:Sb, 4ujc:Cb, 4ujd:Cb, 4uje:Bb, 4v6x:Ab, 5vyc:b1, 5vyc:b2, 5vyc:b3, 5vyc:b4, 5vyc:b5, 5vyc:b6, 6w2s:c, 6w2t:c, 7wts:b, 7wtt:b, 7wtu:b, 7wtv:b, 7wtw:b, 7wtx:b, 7wtz:b, 7wu0:b, 6xa1:Sb, 7xnx:Sb, 7xny:Sb, 8xsx:Sb, 8xsy:Sb, 8xsz:Sb, 8xxl:Sb, 8xxm:Sb, 8xxn:Sb, 6y0g:Sb, 8y0w:Sb, 8y0x:Sb, 6y2l:Sb, 6y57:Sb, 6yal:c, 6yam:c, 6yan:c, 6ybw:H, 8yoo:Sb, 8yop:Sb, 6z6l:Sb, 6z6m:Sb, 6z6n:Sb, 7zjw:SB, 7zjx:SB, 6zlw:b, 6zm7:Sb, 6zme:Sb, 6zmi:Sb, 6zmo:Sb, 6zmt:b, 6zmw:H, 6zn5:b, 6zoj:b, 6zok:b, 6zon:R, 6zp4:R, 6zuo:b, 6zv6:b, 6zvh:b, 6zvj:R, 6zvk:L3, 6zxd:b, 6zxe:b, 6zxf:b, 6zxg:b, 6zxh:b
8 5it7:b 82 77 0.6279 0.6585 0.7013 1.16e-34 7a1g:f, 7ajt:Db, 7aju:Db, 7b7d:f, 8bn3:D7, 8bqd:f, 8bqx:f, 8c00:f, 8c01:f, 8c83:f, 8cah:f, 8cas:f, 8cbj:b, 8ccs:3, 8cdl:3, 8cdr:3, 8ceh:3, 8cf5:3, 8cg8:3, 8cgn:3, 8civ:3, 8cku:3, 8cmj:3, 7d4i:Sc, 7d5t:Sc, 7d63:Sc, 5dat:D7, 5dat:d7, 5dc3:D7, 5dc3:d7, 5dge:D7, 5dge:d7, 5dgf:D7, 5dgf:d7, 5dgv:D7, 5dgv:d7, 6eml:f, 8eub:Bb, 8evp:Bb, 8evq:Bb, 8evr:Bb, 8evs:Bb, 8evt:Bb, 8ewb:Bb, 8ewc:Bb, 6fai:b, 5fci:D7, 5fci:d7, 5fcj:D7, 5fcj:d7, 6fyx:b, 6fyy:b, 6gq1:AR, 6gqb:AR, 6gqv:AR, 6gsm:b, 6gsn:b, 6hhq:c, 6hhq:d7, 5i4l:D7, 5i4l:d7, 6i7o:f, 6i7o:fb, 8i7j:b, 5it9:b, 3j6x:27, 3j6y:27, 3j77:27, 3j78:27, 3j80:b, 3j81:b, 3jam:b, 3jap:b, 5juo:YB, 5jup:YB, 5jus:YB, 5jut:YB, 5juu:YB, 8k2d:Sb, 8k82:Sb, 6ke6:Sc, 5ll6:f, 6lqp:Sc, 6lqq:Sc, 6lqr:Sc, 6lqs:Sc, 6lqt:Sc, 5lyb:D7, 5lyb:d7, 5m1j:b2, 5mc6:f, 5mei:d7, 5mei:c, 7mpi:Bb, 7mpj:Bb, 7n8b:Bb, 5ndg:D7, 5ndg:d7, 5ndv:D7, 5ndv:d7, 5ndw:D7, 5ndw:d7, 7nrc:Sf, 7nrd:Sf, 5obm:D7, 5obm:d7, 5on6:d7, 5on6:c, 7osa:eS27, 7osm:eS27, 6q8y:f, 6rbd:b, 6rbe:b, 7rr5:Sb, 8rw1:b, 6s47:Bc, 8s8d:b, 8s8e:b, 8s8f:b, 8s8g:b, 8s8h:b, 8s8i:b, 8s8j:b, 6snt:b, 6sv4:f, 6sv4:fb, 6sv4:fc, 6t4q:Sb, 6t7i:Sb, 6t7t:Sb, 6t83:bb, 6t83:2, 5tbw:c, 5tbw:d7, 6tb3:f, 5tga:D7, 5tga:d7, 5tgm:D7, 5tgm:d7, 6tnu:f, 4u3m:D7, 4u3m:d7, 4u3n:D7, 4u3n:d7, 4u3u:D7, 4u3u:d7, 4u4n:D7, 4u4n:d7, 4u4o:D7, 4u4o:d7, 4u4q:D7, 4u4q:d7, 4u4r:D7, 4u4r:d7, 4u4u:D7, 4u4u:d7, 4u4y:D7, 4u4y:d7, 4u4z:D7, 4u4z:d7, 4u50:D7, 4u50:d7, 4u51:D7, 4u51:d7, 4u52:D7, 4u52:d7, 4u53:D7, 4u53:d7, 4u55:D7, 4u55:d7, 4u56:D7, 4u56:d7, 4u6f:D7, 4u6f:d7, 4uer:6, 6uz7:b, 4v6i:AX, 4v88:Ab, 4v88:Cb, 4v8y:A1, 4v8z:A1, 4v92:Bb, 6wdr:b, 6woo:bb, 7wtl:Sb, 7wtm:Sb, 7wtn:Sb, 7wto:Sb, 7wtp:Sb, 7wtq:Sb, 7wtr:Sb, 5wyj:Sc, 5wyk:Sc, 6xiq:AR, 6xir:AR, 8y0u:Sb, 6y7c:b, 6z6j:Sb, 6z6k:Sb, 6zce:c, 7zpq:Ab, 6zqa:Db, 6zqb:Db, 6zqc:Db, 6zqd:Db, 6zqe:Db, 6zqf:Db, 6zqg:Db, 7zrs:Ab, 6zu9:f, 7zuw:Ab, 7zux:Db, 6zvi:L, 7zw0:sf
9 6zj3:Sc 84 79 0.6395 0.6548 0.6962 5.62e-34
10 8ova:AW 85 81 0.5698 0.5765 0.6049 1.41e-32 7ase:S, 5opt:S, 8ove:AW, 4v8m:AW
11 3j7a:4 76 74 0.5581 0.6316 0.6486 3.69e-31 3jbn:4, 3jbo:4, 3jbp:4, 6okk:d, 8tpu:S4
12 8rxh:Sc 85 81 0.5349 0.5412 0.5679 2.15e-30 8a3w:Sc, 8a98:Sc, 6az1:c, 8ovj:Sc, 8rxx:Sc, 5t2a:AW
13 4bts:A6 80 78 0.4884 0.5250 0.5385 9.49e-29 4bts:B6, 4bts:C6, 4bts:D6, 4v5o:A6, 4v5o:B6
14 7qix:V 68 83 0.7093 0.8971 0.7349 8.07e-27 7qiz:LA
15 8br8:Se 80 71 0.4302 0.4625 0.5211 2.23e-22 8brm:Se, 8bsi:Se, 8bsj:Se, 8btd:Se, 8btr:Se, 8fvy:b, 8g4s:b, 7pwf:b, 7pwo:b1
16 8p5d:SBB 81 74 0.3605 0.3827 0.4189 2.19e-18 8p60:SBB, 8p60:RBB, 7qca:SBB
17 5xyi:b 82 79 0.3953 0.4146 0.4304 1.46e-17
18 7qep:D7 82 76 0.3605 0.3780 0.4079 1.32e-16
19 6rm3:SBB 82 77 0.3837 0.4024 0.4286 1.53e-16
20 6zu5:SBB 80 68 0.3605 0.3875 0.4559 3.59e-16
21 6tmf:Y 63 52 0.2791 0.3810 0.4615 1.07e-07 6skf:Ax, 6skg:Ax, 6th6:Ax
22 5jb3:W 63 50 0.2674 0.3651 0.4600 1.40e-07 5jbh:W, 4v4n:BW, 4v6u:AW
23 6sw9:W 63 50 0.2558 0.3492 0.4400 1.88e-07 6swc:W, 6swd:W, 7zag:W, 7zah:W, 7zai:W, 7zhg:W
24 8hkx:S27E 59 57 0.2558 0.3729 0.3860 9.78e-07 8hky:S27E, 8hkz:S27E, 8hl1:S27E, 8hl2:S27E, 8hl3:S27E, 8hl4:S27E, 8hl5:S27E, 8wkp:S27E, 8wq2:S27E, 8wq4:S27E
25 3dxy:A 207 37 0.1512 0.0628 0.3514 1.9 3dxz:A
26 5x4z:C 265 39 0.1628 0.0528 0.3590 3.0 6a5l:C, 6a5o:C, 6a5p:C, 6a5r:C, 6a5t:C, 6a5u:C, 8h0v:C, 8h0w:C, 8he5:C, 6inq:C, 8jh2:C, 8jh3:C, 8jh4:C, 7wbv:C, 7wbw:C, 7wbx:C, 5x4z:O, 5x50:C, 5x51:C, 5x51:O, 7xn7:C, 5xog:C, 5xon:C, 7xse:C, 7xsx:C, 7xsz:C, 7xt7:C, 7xtd:C, 7xti:C, 8yfq:C, 8yfr:C
27 4fjc:E 434 37 0.1744 0.0346 0.4054 4.2 3m99:A, 3mhh:A
28 2wkp:A 320 69 0.2326 0.0625 0.2899 5.6 6agp:A, 7ajk:BBB, 6bc1:A, 6bc1:B, 2c2h:A, 2c2h:B, 1ds6:A, 1e96:A, 2fju:A, 2g0n:A, 2g0n:B, 1g4u:R, 4gzl:A, 4gzl:B, 4gzm:A, 4gzm:B, 2h7v:A, 2h7v:B, 1he1:C, 1he1:D, 1hh4:A, 1hh4:B, 1i4d:D, 1i4l:D, 1i4t:D, 2ic5:A, 2ic5:B, 1mh1:A, 5n6o:A, 5n6o:B, 5o33:A, 2ov2:A, 2ov2:F, 2ov2:B, 2ov2:C, 2ov2:G, 2ov2:D, 2ov2:E, 2ov2:H, 2p2l:A, 2p2l:B, 2p2l:C, 8q0n:C, 2qme:A, 5qqd:A, 5qqe:A, 5qqf:A, 5qqg:A, 5qqh:A, 5qqi:A, 5qqj:A, 5qqk:A, 5qql:A, 5qqm:A, 5qqn:A, 2rmk:A, 1ryf:A, 1ryf:B, 1ryh:A, 1ryh:B, 3ryt:C, 3sbd:A, 3sbd:B, 3sbe:A, 3su8:A, 3sua:A, 3sua:B, 3sua:C, 3th5:A, 3th5:B, 7usd:F, 7use:F, 7use:G, 2w2t:A, 2w2v:A, 2w2v:B, 2w2v:C, 2w2v:D, 2w2x:A, 2w2x:B, 8wej:E, 2wkq:A, 2wkr:A
29 7dwq:F 103 24 0.1163 0.0971 0.4167 8.8
30 5n1q:F 260 19 0.1279 0.0423 0.5789 9.6 5n1q:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218