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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHE
IGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLS

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2flh:B 153 151 1.0000 0.9869 1.0000 4.96e-108 3c0v:A, 3c0v:B, 3c0v:C, 3c0v:D, 2flh:A, 2flh:C, 2flh:D, 4psb:A
2 4q0k:A 154 152 0.7550 0.7403 0.7500 6.09e-78
3 2vq5:A 173 135 0.2583 0.2254 0.2889 1.84e-11 5non:A, 5non:B, 5non:C, 6rp3:A, 2vq5:B, 6z82:A
4 4a80:A 159 154 0.3311 0.3145 0.3247 3.02e-11 4a81:A, 4a83:A, 4a84:A, 4a85:A, 4a86:A, 4a87:A, 4a8g:A, 4a8v:A, 1fm4:A, 4mns:A, 4qip:A
5 4c9i:F 162 153 0.2715 0.2531 0.2680 3.81e-10
6 8h3j:A 162 92 0.1722 0.1605 0.2826 6.79e-07
7 4c94:A 161 71 0.1589 0.1491 0.3380 5.41e-06 4c94:B, 4c94:C, 4c94:D, 4c94:E
8 7qb6:A 164 110 0.2053 0.1890 0.2818 6.77e-05 4gy9:A, 4jhg:A, 4jhh:A, 4jhi:A
9 5i8f:A 164 67 0.1391 0.1280 0.3134 3.29e-04 4n3e:A, 4n3e:B, 4n3e:Z, 4n3e:b, 4n3e:C, 4n3e:D, 4n3e:E, 4n3e:F, 4n3e:G, 4n3e:H, 4n3e:I, 4n3e:J, 4n3e:K, 4n3e:L, 4n3e:P, 4n3e:M, 4n3e:N, 4n3e:O, 4n3e:Q, 4n3e:S, 4n3e:R, 4n3e:U, 4n3e:V, 4n3e:W, 4n3e:X, 4n3e:Y, 4n3e:a, 6sjj:B, 6sjj:j, 6sjj:A, 6sjj:R, 6sjj:Q, 6sjj:P, 6sjj:O, 6sjj:N, 6sjj:M, 6sjj:L, 6sjj:K, 6sjj:J, 6sjj:I, 6sjj:a, 6sjj:Y, 6sjj:H, 6sjj:G, 6sjj:F, 6sjj:D, 6sjj:f, 6sjj:E, 6sjj:C, 6sjj:e, 6sjj:d, 6sjj:c, 6sjj:b, 6sjj:Z, 6sjj:X, 6sjj:W, 6sjj:V, 6sjj:U, 6sjj:T, 6sjj:S, 6sjj:i, 6sjj:h, 6sjj:g
10 4ryv:A 155 146 0.2053 0.2000 0.2123 5.23e-04
11 2qim:A 157 135 0.2053 0.1975 0.2296 6.55e-04 3e85:A, 5mxb:A, 5mxw:A
12 4rei:A 146 60 0.1258 0.1301 0.3167 6.79e-04
13 1txc:A 157 49 0.1325 0.1274 0.4082 0.003 1txc:B
14 7uqn:A 148 78 0.1523 0.1554 0.2949 0.018 7uqm:A, 7uqo:A
15 6awr:A 156 132 0.2252 0.2179 0.2576 0.023 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
16 4cu7:A 848 48 0.1258 0.0224 0.3958 0.062 4cu8:A, 4cuc:A
17 6v8l:D 152 78 0.1325 0.1316 0.2564 0.10 6v8m:A, 6v8m:B, 6v8s:A, 6v8s:G, 6v8s:B, 6v8s:C, 6v8s:D, 6v8s:F, 6v8s:E, 6v8s:H, 6v8s:I, 6v8s:O, 6v8s:J, 6v8s:K, 6v8s:L, 6v8s:N, 6v8s:M, 6v8s:P
18 3nj1:A 182 76 0.1523 0.1264 0.3026 0.20 5jnn:A, 3kaz:B, 3kb0:A, 3kb3:A, 3kdi:A, 4la7:A, 4lg5:A, 4lga:A, 4lgb:A, 7mwn:A, 3nj0:A, 3nj0:B, 3nj0:C, 3nmh:A, 3nmh:B, 3nmh:C, 3nmp:A, 3nmp:B, 3nmp:C, 3nmt:A, 3nmv:A, 3nr4:A, 3nr4:B, 3nr4:C, 3ns2:A, 3ns2:B, 3ns2:C, 3ujl:A, 5vr7:A, 5vro:A, 5vs5:A, 5vsq:A, 5vsr:A, 5vt7:A
19 7cwd:A 803 42 0.1060 0.0199 0.3810 0.80
20 7u5y:A 227 92 0.1854 0.1233 0.3043 1.2 7u5y:B, 7u5y:C, 7u5y:D, 7u5y:E, 7u5y:F
21 3cmd:B 188 41 0.0993 0.0798 0.3659 2.8 3cmd:A, 3g6n:A, 3g6n:B
22 2qfc:A 284 36 0.0795 0.0423 0.3333 5.5 2qfc:B, 3u3w:A, 3u3w:B
23 2os1:A 179 41 0.1126 0.0950 0.4146 6.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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