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BioLiP
>protein
MTYKLILNGKTLKGEFTAEAEDAALAEYIFRHLAKHQGVDGEWTYDDATKTFTVTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nl6:B 56 56 1.0000 1.0000 1.0000 3.45e-36 6nl6:C, 6nl6:D, 6nl7:B
2 2i2y:A 150 56 0.7679 0.2867 0.7679 3.45e-24 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
3 6nl8:A 56 56 0.7679 0.7679 0.7679 5.54e-23 6nla:A
4 5o94:A 56 56 0.6786 0.6786 0.6786 6.25e-20 5ofs:A, 5ofs:B, 5ofs:C, 5ofs:D
5 7rxc:B 439 55 0.6786 0.0866 0.6909 1.19e-18 7rxd:B
6 5lde:B 225 52 0.5536 0.1378 0.5962 1.76e-10 5lde:A
7 8jxr:C 341 55 0.4464 0.0733 0.4545 1.18e-04
8 1olp:A 370 40 0.2321 0.0351 0.3250 0.37 1olp:B, 1olp:C, 1olp:D
9 1hz5:A 72 50 0.3036 0.2361 0.3400 0.73 1hz5:B, 1jml:A, 1k51:A, 1k52:A, 1k52:B, 1k53:A, 1k53:B
10 2zy2:A 521 33 0.2143 0.0230 0.3636 1.0
11 4h6q:A 281 31 0.2143 0.0427 0.3871 1.6 4h6q:C, 4h6r:A, 4h6r:C
12 5xwm:D 368 28 0.2143 0.0326 0.4286 2.2 5xwm:A, 5xwm:C, 5xwm:B
13 4z9b:A 157 26 0.1607 0.0573 0.3462 2.7 7kh8:A, 7kh8:B, 5kqg:A, 5kql:A, 3n8i:A, 7uw6:A
14 8d2q:A 906 39 0.2500 0.0155 0.3590 2.7
15 6wbr:A 942 39 0.2500 0.0149 0.3590 2.8 6wc0:A
16 8d2k:A 1105 39 0.2500 0.0127 0.3590 2.8 8d2l:A, 8d2n:A, 8d2p:A
17 1pnt:A 157 24 0.1429 0.0510 0.3333 2.9 1c0e:A, 1c0e:B, 5jnw:A, 6y2v:A, 1z13:A
18 7nrr:AAA 329 17 0.1607 0.0274 0.5294 2.9 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
19 8d2o:A 749 36 0.2321 0.0174 0.3611 2.9
20 4nea:A 505 16 0.1250 0.0139 0.4375 3.0 5dib:A, 5dib:B, 5dib:C, 5dib:D, 5eyu:A, 5eyu:B, 5eyu:C, 5eyu:D, 5ez4:A, 5ez4:B, 5ez4:C, 5ez4:D, 4mpy:A, 4mpy:B, 4mpy:C, 4mpy:D, 4mpy:E, 4mpy:F, 4mpy:G, 4mpy:H, 4nea:B, 4nea:C, 4nea:D, 4qn2:A, 4qn2:B, 4qn2:C, 4qn2:D, 4qn2:E, 4qn2:F, 4qn2:G, 4qn2:H, 4zwl:A, 4zwl:B, 4zwl:C, 4zwl:D, 4zwl:E, 4zwl:F, 4zwl:G, 4zwl:H, 4zxu:A, 4zxu:B, 4zxu:C, 4zxu:D, 4zxu:E, 4zxu:F, 4zxu:G, 4zxu:H
21 3u3k:A 289 37 0.2500 0.0484 0.3784 4.8 2a3r:A, 2a3r:B, 2d06:A, 2d06:B, 4gra:A, 4gra:B, 1ls6:A, 3qvu:A, 3qvu:B, 3qvv:A, 3qvv:B, 3u3j:A, 3u3j:B, 3u3k:B, 3u3m:A, 3u3o:A, 3u3r:A, 1z28:A, 1z29:A
22 6xyw:AH 110 14 0.1429 0.0727 0.5714 5.5
23 5z2c:I 408 29 0.1786 0.0245 0.3448 5.7
24 5z2c:A 445 29 0.1786 0.0225 0.3448 5.7 5z2c:B, 5z2c:C, 5z2c:D, 5z2c:E, 5z2c:F, 5z2c:G, 5z2c:H
25 4l9o:A 330 14 0.1607 0.0273 0.6429 5.8 4l9o:B
26 7nvm:Q 538 39 0.2321 0.0242 0.3333 6.0 8i1u:H, 8i1u:P, 8i9u:H, 8i9u:P, 7nvl:Q, 7nvl:q, 7nvm:q, 7nvn:Q, 7nvn:q, 6qb8:q, 6qb8:Q, 8sfe:q, 8sfe:Q, 8sff:Q, 8sff:q, 8sg8:Q, 8sg8:q, 8sg9:Q, 8sg9:q, 8sgc:Q, 8sgc:q, 8sgl:Q, 8sgl:q, 8sgq:q, 8sgq:Q, 8sh9:Q, 8sh9:q, 8sha:Q, 8sha:q, 8shd:Q, 8shd:q, 8she:Q, 8she:q, 8shf:Q, 8shf:q, 8shg:Q, 8shg:q, 8shl:Q, 8shl:q, 8shn:Q, 8shn:q, 8sho:Q, 8sho:q, 8shp:Q, 8shp:q, 8shq:Q, 8shq:q, 8sht:Q, 8sht:q, 7trg:B, 7ttn:B, 7ttt:B, 7tub:B, 7wu7:H, 7wu7:P, 7wz3:q, 7x0s:J, 7x0s:P, 7x0v:J, 7x0v:P, 7x3j:Q, 7x3j:q, 7x3u:Q, 7x3u:q
27 7wz3:Q 472 39 0.2321 0.0275 0.3333 7.7
28 1zj8:A 546 13 0.1429 0.0147 0.6154 8.1 1zj8:B, 1zj9:A, 1zj9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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