Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MTYKLILNGKTHKGELTTEAVDAATAEKHFKQHANDLGVDGEWTYDDATKTFTVTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nl8:A 56 56 1.0000 1.0000 1.0000 1.01e-35 6nla:A
2 2i2y:A 150 56 0.8929 0.3333 0.8929 4.47e-29 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
3 5o94:A 56 56 0.7679 0.7679 0.7679 2.01e-24 5ofs:A, 5ofs:B, 5ofs:C, 5ofs:D
4 7rxc:B 439 55 0.8036 0.1025 0.8182 9.22e-24 7rxd:B
5 6nl6:B 56 56 0.7679 0.7679 0.7679 1.10e-17 6nl6:C, 6nl6:D, 6nl7:B
6 5lde:B 225 52 0.6964 0.1733 0.7500 1.53e-16 5lde:A
7 8jxr:C 341 55 0.5179 0.0850 0.5273 1.26e-07
8 5aob:A 278 32 0.2143 0.0432 0.3750 0.65 5aoc:A, 7bfr:A
9 2q4a:B 322 21 0.1964 0.0342 0.5238 1.7 2q4a:A, 1y0z:A, 1y0z:B
10 2gh9:A 378 36 0.2143 0.0317 0.3333 2.6
11 7nrr:AAA 329 32 0.2500 0.0426 0.4375 4.4 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
12 6ffl:A 383 46 0.2143 0.0313 0.2609 7.8
13 4l9o:A 330 14 0.1607 0.0273 0.6429 8.5 4l9o:B
14 8khn:A 287 19 0.1786 0.0348 0.5263 9.3 8kho:A
15 7mq8:LW 453 20 0.1786 0.0221 0.5000 9.7 7mq9:LW
16 7mqa:LW 452 20 0.1786 0.0221 0.5000 10.0

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218